Scaffold Ga0272438_1002101

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002101
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27701
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (21.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028367	Metagenome	191	Y
F036035	Metagenome	170	Y
F038008	Metagenome	166	Y
F041516	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100210116	F036035	N/A	MKDRMKDDATXRKHHELEKASRNQKRNDSDHLNNTLDKHTESISNCNVIKESDERERK
Ga0272438_100210129	F028367	N/A	LCSQIEVLLKENYFEKLFLINASFISQSNSFSLRSLIDSDFVVYMLIHYKLVNKVYQKLEIQSILLAKEKLIQEYDEKLARKIITHKILFNLIIKSHKKLTVLILIADIEHHEVILSKLXMNKNEILLNMRHDTIVFSDQLNISISIFSISSNTKHSS
Ga0272438_10021013	F036035	N/A	MKDRIKDDATXRKHYKLKKASRNHERDDSDYSNDTFDKHTESISDYNVIKESDEREKK
Ga0272438_10021015	F038008	N/A	MKMNXSHLYIVIFXSKSLKIVIVANKKMSIKQHNLDMFTLKQRVYSNDNDSKDDVTAIAMKINXELNKRLKESTLIITHHDELKELVARMKHFTDVVTANQECHEKIYKVYNDNQTFLKTMKVMISTKNQTHLQXVQIAHESI
Ga0272438_10021017	F041516	N/A	MTQRIIHIHEAYNSSLRNHKIIHEKENLSNIEKMLHMSKESILVENFNLHHFTXEESFYS