Scaffold Ga0272438_1002043

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002043
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28108
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036035	Metagenome	170	Y
F046102	Metagenome	151	Y
F069514	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100204310	F046102	N/A	VTFIKDAVKDVLISSTMSSSDNLFALKSLITEYVLFSNEISYSLKSLIDIEAADYSFIDKLITQNVCDYLQIKSLSLIKLKSIREFNDHYAKKLITHAIYLNLTVQDHIKRFIFMLITXLNQHQMILEKTXMNKIKVTINMKDDCFQFSSFETYIKAFIKAHSTVLSSKKIAIKQKSSIF
Ga0272438_100204315	F069514	N/A	MQNDXTKLLLMIKFIDNNALFSIIFLISFFLNKDFHSCMNFELDVIEYKSSYERLQMTKVESISEYMNKTLKFAHKSLVKT
Ga0272438_100204320	F036035	N/A	MKDRMKDDAMQKEHHELKKAFRNHEYDNSNHLNDTFNKHIESISDCDIIKELNERKKE