Scaffold Ga0272438_1001825

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001825
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30050
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (24.24%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008169	Metagenome	337	Y
F023763	Metagenome	208	Y
F028368	Metagenome	191	Y
F038484	Metagenome	165	Y
F070710	Metagenome	122	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100182510	F038484	N/A	MRSILMCITKVLFAFXRSSCIFIVLLLRCNLCAEITLMFATHSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKRVHRLHLDCIFASSXMKTFRSIIFLMTSKREMTRLTLVKRAHISLHACLIFCIQSLTQLCSVILFCSMFKXTCNKLMYVSVFKVLMLTLLNASATXCRVXFXSVSSLHFLLNSSSFLSRXCQIDASNVISDLTTAEYTCLAFVKITSHVKISRXLSVSILVTXFIFICXRCTSHHSFMFSCIFRIRTSDFDLITEFSIYMLVIMLNFFDFLVKCVSSYFSDANITSXVQTHFAQTSCALLNVLQISSVNLL
Ga0272438_100182512	F070710	N/A	MIKQSFLQILQYNIRKSLRIQESFLINREIREFDIVAIQKQDHNNNDSQSFSSAYNFFHLVKNSSSQSRTCIYINKYLRFNQXIVETAKSNICSIRILTRNADNKTQTLRLLNVYNSCSLFITFTKKSSIISRLNELLKNDCKQLIIKDFNLHHSH
Ga0272438_100182518	F023763	GAG	MNFQNCLILILMLRIKCIFLFKKIFXTTCQNIQLIINLVEMISIVIVESKQKLTSMSLTTTQLLNXHEILKIFMICDHFNKINKVFKLXSSFLESANNDHEFFIIDFVVTLDXIMLLQKVSDXMKNFILIVLKENVFKHIVQSIDFYHNLVIXIIMTKNILESEDFLKNVECNLTFLKLNKEYIFSDETSERSSYFTIVINESFIEVREI
Ga0272438_100182529	F008169	AGAAG	LKTKLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYEKIQNKLEINVDLFSNERFKLNYVHSRLFNDAAEITQARRERDCVNLYKIINNLLKELAQLFNDSNKKVNFRREYYNLIQEFKKFNEFYTQFQRLFFYLDYHEKQLIADLKDKIHSRLXFIXVDQLVQSDSLKKIRFYLIHLNNNQRVIREIKNKIKRVNNLSKTIFHKATVVTQSVDHAKSDQLKSRDAILTSVKEADILVKSCFICHKSDHSSKECFDQSTRINAVNNEYDRFDFDSNFDSKN
Ga0272438_100182530	F028368	AGG	LKENYFEKSFLIDAHLISQNQSFNLRSLIDSDSVIYMIIHSNLVNKVCEKLKIQSISLAKEKLIRDYDEKISKKIITHKILFNLIIKSHKKLTVSMLIANIDHHEVILSKLXMNKNEILLNMQNDIIVFSNQLNTSILIFSISLNSKHSSXLQSSSLSSIIQTKISMMLKRLIQKESFSIXSINAASFKTLLNHSKRDKIEIFTLFIMNINRKIAYNTQCDLNALNVSSINETTQNLKDIKAKLSSKYHEFLDVFD
Ga0272438_100182532	F002432	N/A	MKFSDNSNIFSISSMISFYFNKRFHSRMSFNLNTTDYETTCERLEARKVDDIVIXMKELLNFDHQQLKKTKLIIEVQINKHRXNVTYEVDDXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLQLYSKDLLSKQHSESLKSITIEDDEHXEIDDILNFRRYRDRIQYKVKXIDLDRNDEXYYVDKGKFDDLEEVLNEFHKLYSNKSR
Ga0272438_10018256	F100079	N/A	MFKHRHSICKXYANEKTLLKEEKHKQISKEXLNYVVXLKV