Scaffold Ga0272438_1001766

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001766
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30645
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057011	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100176618	F057011	N/A	VLXLNLKSQCIRKXXVXSIYIELXVRFXFKKLTISFRVIEKIEIIFLCNQIKVLLKENYFEKSFLINASFISQRNSFSLRSLIDSDFFVYTLIHDKLVNKICQKLEIQFISLAKEKLIXDYDDKLARKTITHKILLNLTIKSHKKLTVSMLIADIEHHEAILSKLXMNKNKILLNMRHDTIVFSDQLDVSISIFSISSNMKHSSXLRSTLISSAAHSKISKMLKHSVSFIQKESFSI