Scaffold Ga0272438_1001762

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001762
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30667
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (25.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F010214	Metagenome	306	Y
F020121	Metagenome	225	Y
F023763	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100176220	F001951	GAG	MTMTKLKFIDSSRNEIERNEDTVETTVTEMMIFKFKELLVNAEIFLTLTNEMMTKMK
Ga0272438_100176223	F023763	GAG	MSFQNCLMLILMSRIECILLFKKIFXATCQSIQLIIDLVKMISDAIVEFRQKLTSTSLMTTQLLSXHEILKVFVIRDHLDKVDKVFKLXSSFLESANNNYKFFIVDLVVTLDXVMLLRKVSDXMKNLILIVLKENVFEHIVQSIDFYHNLVIXIIVTKNNLESEDFLKNVECNLTFLKSDKEYIFSDETSERSSYFTIVIDESFIEVREI
Ga0272438_100176226	F020121	GAG	MKKLTEHLRDEMLIAQIIYKFNVNLSRCSCFKYFIEDEVXLNACNFSIAHLTVKLDDHNVDFFKIKRIFKNNSLIIELNLSTFMKIHSIFHVILLSHIASNLLSSQCQKSXELVVIKNDERFXYVNSILNFKHDRCYNSLLLKYYID
Ga0272438_100176231	F010214	N/A	VSVLFIYNTSSLLCSLLMIFYTTMFXFNSRFINERCFLRTRDVHDCNIRRAAFFYSMIVIHCTEKYVMKKRRVQXEDKVXLYXIILFFSXFNLCHVDVEXIVSINMQLQSFNDXLXLIEENAFXLFFYALNFSRR