Scaffold Ga0272438_1001683

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001683
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31463
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F075493	Metagenome	118	Y
F091080	Metagenome	107	Y
F094622	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10016831	F075493	N/A	MRSVXAVHEYMLRRLMTSFAVTSQAIHAXNISRVQISVQIYAFDSDVHCESAFCFLKIITHLYRLIAQMRSLCXDCVDVCDAFSVLFPSLISLIFVILRYCDAIACXNHCEEEDVSSASRLYLRIFLNEDIQKYYFLDDEXARNDAINSRQTNVY
Ga0272438_100168313	F009580	N/A	VKRLKLVNKIICIQISERDLAQRLDFFHEQQDFFIYINNVTVINVHDMQSKELFIXAFFNDFAXMLQLAVVIQLSLVADFLNLRNDQSLILNNDNDKT
Ga0272438_100168314	F001951	GAG	MIMTKLRFIDSSRNEKERDKNTVETIVTEMMIFELKELLVDAEMLLTLMNKMMMKMK
Ga0272438_100168320	F094622	N/A	MFTLKQRVYLNNDDSRDDVTAIAMRMNXKLDKRLRKLTLVITHHDELKELVARAKYLADVATANQECHEKIYKVYNDSQTSLKTVKVMISTKDQTCLQQVQIAHESIQS
Ga0272438_100168324	F091080	N/A	MIILCCSRQVINKDIISFLCFYIMINVYRACVINFQSKILSYNXINFDFDSNIDXILKCSHSSDIKNSLMKVMSMTSVFIRVKDLNIFSRLFKMTSIMNDLKLNESSGMLMKQNMNMLFLVITLTKADRFSNS