Scaffold Ga0272438_1001643

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001643
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31870
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.81%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008115	Metagenome	338	Y
F011463	Metagenome	290	Y
F033266	Metagenome	177	Y
F038484	Metagenome	165	Y
F066295	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100164310	F038484	N/A	MHLILMCIARMLSAFXRSSRIFIVLLLRCDLCAEIALTSATRSLYFFHRXFHXSLXYCVIAMLSLVEIIVKKRMCRLRLDCIFASSQMKTFRSTIFLMTSEREMTRLTFVKRARISSHACLISCVRSLTRLCNVILFCSMFRXTCSKLVYISVFRVSMFTLLNASATXHRVXFXSVFSLRSLFDSLSFLLRXCQTDASNVISDLTTAEYTCFAFVKITSHVKTSRRLSVSILVTXFISICRRCASHCSFVFSCISRTRTSDFNLITELSICMLVVMLNLFDFLVKCVSSYFSDANVASXVRAHFAQTSCALLSVLFIENMLHTLHATYIRHDLYADFFLSER
Ga0272438_100164318	F008115	N/A	MLXNVYRLHDLLSSIVSNRDFQFISTMXKSLCKQLRITASLFTVYHLKINDQTKQVNQNVECKLRIYCNYMQNDXVKXIFMMKFSDNFNIFSIISMISFYFNKEFHSXMSFDLDTTDYETTHERLEAKKADNTVIQMKELLSFDHQQLKKTKLIIEVQINKHRRNVIYEVNDXVXLSFRNVKTTRLCKDLKDKQLKLYQITVKAKVFYHFYLSISMKHLHSMFSSKLLQSYSEDSLSEQHAESLRLIIIDDDDDEHXEINDILNFRCYQDRIQYKIKXKDLDKDNEXYYVDKDEFDDFKKVLNEFHVLYSRKSR
Ga0272438_100164319	F011463	N/A	MKLCKDLKDKQLNLYQIIVKVSIFYHLYLSVSMKHLHLMFSLKLLQSYSEDLLSEQHSESLRLITIKDDEHXKINNILNFRCYQDXIQYKVKXINLDKNDEXYYVDKRKFNDSEKVLNEFHKLYSDKSR
Ga0272438_100164325	F066295	AGAAG	LKIKLQAKENTSSDFIYSEHSRSQKILDSSLYTDEKNSIXKNXYEKIQNKLEINVDFFSNEXVKLSYVHFKLFNDAAEVTQSRCEHDCVNLYKIIDDLLKELTELFNDSDKKVNFCKEYYNLIQEFKKFNEFYTQFQHLSFYLNYHEKQLIADLKDKIHFHLXFIXINQLV
Ga0272438_100164326	F033266	N/A	LIVSFKHDSDSHLFTEEHFEEFQNHFSQIFDADSSKSSSAASFIHEDDESFIEMIILFMFYEIXKTXNLALNEETDXFYKLNKQ