Scaffold Ga0272438_1001546

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001546
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32955
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (30.30%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028667	Metagenome	190	Y
F057011	Metagenome	136	Y
F075494	Metagenome	118	Y
F083460	Metagenome	112	Y
F104135	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10015461	F083460	N/A	MRLRMKSSDSQAYSDALLELNASSIKYATRRXLHELLNHHLNHEESQDNSENDDENEAAEAV
Ga0272438_10015462	F057011	N/A	LKENYFEKSFLINAFLIFQNESFSLQFLIDSDFIIYMLIHIRLVNKVCKKLEIQFILLVKEKLIRDYDEKLVRKTIIHKILLNLTIESHKKLTMSMLITDIKHHEAILSKLXMNKNEILLNMKHDTIIFFDQLNFSISIFSISSNMKHLSXSXLTFLSSAAHNNTSKILKHSVLIIQKESFSI
Ga0272438_100154624	F075494	GAG	MFIYSVSEXRYLAKHVESRSQDEIYYTXVINEVEKMSVHSVNENTSTCSAMHVRSMLLRIMTLAMREMHLDEVHFSRSRISQFESTTSKSTDVETLTYKDHNVAEKQLNSVAETVDCKLLVSRVIVRVLTIHETIYNFSNKFVVELIKILQQEDEFAVKLKADETMSIQKSDVEA
Ga0272438_100154628	F104135	AGCAG	MNASQRSNQTIRMFAAHLSILKHQLSLYSDEHKRAHLFIKLRSELHVIIINVQSISITXDALINLVAQLKTNLRKEHVLSSKXSQDEDLHDRDKVNKKTHSKRKKSHRSIRLNFSSKTSSHASSCYSKNLFNITCYMCNRKNHYSTDCRDEKIKNRSKEFDANXVFIDLMLHISCFKILKKDKLLTNASSHRGKNKKFSS
Ga0272438_10015468	F028667	GAG	MTLKLNEQXIDLQVDHIKRLNELEINQMTINTQEEIIIKLXEKVLSLKKRQRSANQSXSRQSMKSQASIENHTXRKSFTLFNNDHHKFFKFSNLFIFTDEDESTXDSXRVKIDNKLQTNVNHFNNENICIVYVISRLEDDAAEHIFAQHQHHASHSYISIDELFEHLKEIYDELNKNRKCCRKYNALRQADKSFNVFYFNFMKLFSYLEYDDYTLMNDLQNKINNRLQNALSVCSKNFTSLTRLKIFLQDVNSKQXVNYQLRSECCTVIIKVTVVPDKCATSLSVTTSIINYVKSTIFSISESVRSSIICYICKIFDHLFKNCFQLNKINTSASHAFTCCLHEIIISKNKENEKMSFKNSEAKN