Scaffold Ga0272438_1001457

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001457
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34223
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.79%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F020121	Metagenome	225	Y
F021896	Metagenome	216	Y
F023763	Metagenome	208	Y
F074204	Metagenome	119	Y
F096306	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100145720	F096306	N/A	MFAMYDNCAVNSLIVDDDFNEERSCKDNSELHALMILFNITILIATNVKIVFVESNDK
Ga0272438_100145723	F009580	N/A	VRRLRLVDKMICIQISERNLAQKLNFFCRQRDFFIYTDDVTVIDVHDMQSEELLIXAFFSDFAXMLQLAVVAQLSLVADFLDFKNDQNLILNDDNDET
Ga0272438_100145724	F074204	N/A	MIVFCILHQAQSKVFTLVLIDSEIFTYVFMNKFFAQQHHLFLHQLTHSHRLQEFDDQITLINDITYVIKITIILDKYIKKLFFYVIELNQYFIIMNLS
Ga0272438_100145726	F021896	N/A	MKNNLKSEDFLKNVECNLTFLRSDKEYIFSDEMNEXDSYSTIVINESFIKVCEI
Ga0272438_100145727	F023763	N/A	MLILMLRIEYILLFKKIFXATCQSIQLIIDLVEMISNVIVESKQKLTSMNLMIIQLLSXHEILKIFVIHDHLNKIDKVFKLXSSFLESVNNDHEFFIVNLIVTLSXIMLLQKVSDXMKNLVLIILKKNVFEHIVQSINFYHNFVI
Ga0272438_10014576	F020121	GAG	MLIAQIIYEFNVNLFHRSYFKYFVEDEVXLNVCNLSIVYLAVKLNDHNVDFFKIKCIFKNNFLIIELNLSTFMKIHSIFHVILLSHIISDSLSSQHQKSQELVIIKNNERFXYVNSILNFKRDRCYNSSLLKYYVD
Ga0272438_10014578	F023763	N/A	MSFQNCLMLILMSRIECISLFKKIFXATCQSIXLIIDLVKMISDVIVESRQKLALMSLMTIQLLSXHKILKIFVICDHLDKIDKVFKLXSSFLESANNDHEFFIIDFVVTLNXVMLLXKVSDXMKNFILIILRKNVFEHIVXSIDFYHNLVIXIIMMKNNLESEDFLKNVECNLTFLRSDKEYIFSDEMSERNNYSTIVIDESFIEVREI