Scaffold Ga0272438_1001327

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001327
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35843
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (24.39%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F026450	Metagenome	197	Y
F076668	Metagenome	117	Y
F078020	Metagenome	116	Y
F084912	Metagenome	111	N
F094620	Metagenome	105	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100132711	F076668	N/A	MTCLLLTSSFLTYALARKMSKSSMHSTDHYVIKETSVFKSITTTKKIMHMSNALFTDILMLCNRKDITNQTLLRCVKFENIRRLQKISFLKXSSKDXLKRLCMIMLKQTCYNIIFAFSALSXMLFKKSLKTLXFSLXKVSALFFHIITLVVEFSLTFCFMQTSTXXQFMSNTSSFKIEIXDLXRISXXILMSCFSRQTRKCLSSSVR
Ga0272438_100132714	F104134	N/A	MSIVVCTSCVSTAKIQRATCVELTISFAHVXVFFRFAXASELTAXRKMSLLLSLQSDMIKSLXSVNTSAILCRICSINFFCISFISLLFIILIMTSYFLQSDDESSLRRCFLVVISSLITFAYDMIFVERRMLLCVCNCLLSSXIDVFSFYTSFAMNMFXFTXCFSSELSXRHQISFNAISFHEXSLLFSFSNVDIFISRLIMLVTFSSSLHKHFNFAFLFSCDESTLLAIIFESALLRFMQFIVIQSSSKFTLSCL
Ga0272438_100132721	F002432	N/A	MKFSDNSNIFSITSMILFYFNKEFHSXISFDSDITDYETTCERLEARKANDIVIQMKELLNFDHQQLKRTKLIIEIQINKHRXNITYEIDDXVXLSFKNVKTTRLCKDLKDKQLDFYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLQSYSENFLSEQHSESLRSIIIKDNEH
Ga0272438_100132724	F094620	N/A	MKFSDNFNTFSTILMISFYFNKDFHLRMSFDSDTTDYKMTHQRIEARKINNIVTQMSKLLIFNHQQLKKIKQITEAQMNKHKXNIIYEVDDQVXLVFENIKITKSCKDLKDKQLDLYSITVKVEIFYRLQLSRSMKHIHSVFSSKYLRSSSNNSLLKQHSELSRLMIIEENEEHXEVDDILNFRRYRERLQYKIKXIEINHDDEXYYVDKGKFDDSKKVLNKFHKLYSNKSH
Ga0272438_100132727	F078020	N/A	MQFFFDRLINAXKDAALTLNIEKFFFKAVEADCXSILRAELIEEFDDHDHFECEALTDIEKTKMKAFNXFEKTMTSFCIFSSISFLFIQNFSNMTSXXFISAINIETVNFLXLSTVRLSRILXVMIFFVSFPLYSLINFSLASCMSXISSFXHIXLTSFVXIKM
Ga0272438_100132728	F084912	N/A	MTDQSKSHDAVLTNVKENDLLIKNXFLCHKSDHTSKECLNKSFRINALNDEFDHSSNFNSESDSKN
Ga0272438_100132729	F026450	N/A	MSCFFKERFEASFFIVEDNDSFAEIITFSMTMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSIXKNXYEKVQNKLEINVDLFSSEXVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVNELLKELAQLFNDSDKEVDFCRNYYNLIQEQKKFSKFYTQFQRLFFYLNYQEKQLIVDLKDKINFQLQFTXITQLIQLSTLKEIRFYLIRLNNDQQAIQEIKNKEAMIKA