Scaffold Ga0272438_1001249

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001249
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37036
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (23.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F028368	Metagenome	191	Y
F052973	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100124910	F004755	GAG	LSYIHSRLFDDIAEIIQAKHERDCVNLYRIIEDLLKKLAQLFNDLNKKVNFHRKYYNLIQEFKKFNEFYTQFQRLFFYLDYHEKQLIVDLKDKINFRLXFIXINQLVQSDFLKEIHFYLIYLNNDQRVIQEIKNKLKRVNNFSKTIFHKVTVITQSVDHSKSDQSKLHDAILTNVKKADVLVKICFIYHKLDHSFKKCLNRSTRINAVNKEYDHFDFNSNFNSKN
Ga0272438_100124916	F006206	N/A	LLXFEFRFKKLVISSKVIKEIEIISLCKLDEILLKENYFEKSFLIDTHLISQNRSFSLHFLIDSDSVIYTIVHSNLINKVCKKLKIQSISLTKEKLIRDYDEKIFKKIITHKILFNLIIESHKKLTASMLIADINHHEVILSKL
Ga0272438_10012492	F028368	GAG	MKYXIYYIXSTEEIKIISLCTLDEILSEENYFEKLFLIDIFLNSQNRSFSLHSLINSDSVAYMLIHANLVNKVCKKLEIQSILLTKEKLIRDYDEKIFKKIISHKILFNLIIKSHKKLTVSMLIADIDHHEVILSKLXMNKNKILLNMQNDIIVFSNQLNTSISIFSISLNSKHSSXSRSTSFSFIIQTKIFIMLKQSVSTTTKKESFSIRSINAALFKTLLNQSKKNQTEVFALFITDIDKEIAYNTQCNLNVLNDFAINETTQNLKDIKVKLSSEYHEFLDVFD
Ga0272438_100124920	F008668	N/A	MILFYFNKEFHSQMSFNSNTTDYETTYERLEAKKANDIIIQMKELLNFNHQQLKKMKLIIEVQINKYRXNIIYEVNDXI
Ga0272438_100124921	F052973	N/A	MFKDCARLERNVFMTXKENDVNEQDVDERKECXERKKVLSHIXIKSESDFN
Ga0272438_100124924	F028368	GAG	LCKLDEILSEENYFEKSFLIDIFLNSQNRSFSLHSLIDSDSVTHMLIHANLVNRVCKKLEIQSISLIKEKLIRDYDEKIFKKIIIHKILLNLIIESHKKLTVLMLIADINHHKVILSKLXMNKNEILLNMQNNVIFFSNQLNTFISIFSIFLNSKHSSXSXSTSLSSIIQTKIFIMLKRSVSTTTKKELFLIQSINAASFKTLLNQSKKNQTEVFVLFMTDIDREITYNTQCNLNVLNVSSINEMTQNLKDIKVKLS