Scaffold Ga0272438_1001237

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001237
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37257
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (12.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F002432	Metagenome	559	Y
F008169	Metagenome	337	Y
F036035	Metagenome	170	Y
F041516	Metagenome	159	Y
F094622	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100123710	F000597	N/A	MKDVLISSTISMSDDSFASESLTTEYVLSSNEISYSLKSLIDIEAADYSFIDKVIAQIVCDQLQIEYLTLIKAKSIREFNNHYAKKFIIHAIYLNLTVQDHMIDTTSMLIIQLN
Ga0272438_100123723	F008169	N/A	MQSSLDQENQLILMKQTSENKLFNSIKRINDKESSXIAXESFKNSQIKNTSLINNILLXRLNTXSYVFINTVEHHHSLDLVLSSNFIMSKRSSIEECFEEFQSRFSQISETDSSKLFSAESFINEDNESFAETVILSVSIENXKTRCMILNRETDRLNKLSKQRDDEIKELKTKLQTKEITSSDFIYYERSRSQKIPDSFXFTDEKNFTXKNXYDKIQNKLEINVNLFSNEXVKLSYVHFRLINDAADVAQSRRECDCVNFYKIVDDLLKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLXFVXIDQLVQSDFLKEIHFYLIHLNNDQRVIRKIKNKVNLIKRVDDLLKIIFHKAVVTQSINHSKSDHLKSCDAILTSVKEADVLVEICFICHKSDHSSKECSNQFIRDQCSKQXIQSFXIQFXFEFEFKKLVISSKVIEEIEIISLCKLDEILLEENYFEKSFLIDAHLISQNQFFSLCSLIDSDSVAHTR
Ga0272438_100123725	F002432	N/A	MKFSDNFNIFSIISMISFYFNKDFHLRMSFDSDTTDYETTYERLKARKANDIVIQMKELLSFDRQQLKKTKLIIEAQINKHKRDVIYEIDDXVXLFFKNVKIMRSCKDLKDKQLESYQITVKAKIFYHLHLSVSMKHLHSMFSLKLLQSYSEDSLSEQHAEFLRLIIIDNDNDEHXEIDDILNFRRYRGXIQYKIKXKDLDKDDEXYYVDKDEFNDFEKVLNEFHTLYSRKSR
Ga0272438_100123728	F036035	N/A	MKDDAMXKKHHELEKAFRNHEHDNSNHSNDTLDKHTESISDCDIIKESDERERK
Ga0272438_100123729	F094622	N/A	MFALKQRVYSNDSDSKDDVTMITMRINXELNKRLRELTLIIIHHDELKESVAKMKHLANVVTVNQECHEKIYKVYSDSQTFLKTVKVMISTKDQTRLQXVQIAHESI
Ga0272438_100123733	F041516	N/A	MTQRVIHIHEAYNLSFRDHEIIHEKENISDIEKTLHMSRESILVEDFNLHHFTXKESFYS