Scaffold Ga0272438_1001167

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001167
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38478
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (6.98%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021026	Metagenome	220	Y
F040408	Metagenome	161	Y
F041516	Metagenome	159	Y
F050043	Metagenome	145	Y
F064254	Metagenome	128	Y
F075494	Metagenome	118	Y
F087979	Metagenome	109	Y
F094624	Metagenome	105	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100116710	F075494	N/A	MFVHSININGYSAEHVESRLQDETHXXTQVINDVEKMFIHSVSEXRYSAKHVKSRSQDEIYCIXVINKVKKMFIHNVSENMNTCSAVHVRSMLLRVMTLAMQETHLDEVHFLKDRISQFKSTTSRSTNVEILTYKYHNVTKKQFNSVAETVNCKQLISHAIVKVLTIHKTTYNFSSKFVVELIKILQQEDEFAVRLKADEMMSIXKNDVEA
Ga0272438_100116720	F087979	N/A	MKEKNESSTFIYMNXAESRLNSSFIDLRLQKFTHMTEMIETELLKLD
Ga0272438_100116722	F001951	N/A	MTKLRFIDSSRNEKERDEDIVKITVTEMTIFEFKELLVNAEMFLTLMNEMMMKTKQD
Ga0272438_100116724	F021026	N/A	MIVFCILRQAQSKVLALTLIDSEVFAYVFMNKFFAQQHHLFLHQLTHSCRLXEFDDQVALINDITHVIKITMILDEHIKRLFFYVIELSQYFIIMNLSXLHHHVIDVNFEHNIFILSFFFCLNYCYSFLVKIYDLNQQEENFLFKVNKVAFSQSRSQFAHKK
Ga0272438_100116728	F094624	N/A	MKHYLRVFVNYMQNDXAKXLSEIEFIVNNASSSITLASLFLINLSQNSRLDFKSSESLLKNFTSQAXNKLINVKKFIKKMKKLTEHLCDEMLIIQIIYEFNVNLFHRSCSRYFVENEVXLNACNLSIARFAVKLDDHNVDFFKIKRVFKNNFLIIELNLSTFMKIHSIFHVTLLNHIASDSLLS
Ga0272438_100116736	F041516	N/A	MIQKVIHIHEAYNSSLRNHKIIHEKENLSNIEKMLHMSKEGILIKDFNLHHFI
Ga0272438_10011674	F050043	N/A	MKRKXRLKETERMINKTMIIIHSCLCFIISITQFNQKTSNFYASFTHDXCCHLCQLHITYTIYNVIYTHYNXRXIIIQLKVSFFLVFSQRFEDFYRELLNXNHEYTSLFIKINQDIDYXNQEXTHLKKKIIIMMNXQLKIKSKTKVRDXIENQIXVSSETLXLCQDII
Ga0272438_100116741	F102180	N/A	LTLVITHHNELKKLVVEAKHLADVVTANQEYHEKIYKIYSDSQISLKAVKVMTSTKDQTRLQ
Ga0272438_100116742	F064254	N/A	MQELYELISFLLFLSFIXLFNDVTVXNXFSMLVKNIIXMITVIMLMISRSFLKFMMFSLHCIIFHSIFHLKHVNRTCLINIQSLSHLHIAIATSNTRFSCRNXLKSIFLMHNCINNALXDFAXFLCRCKCXXIIFDVKYXKXAVLNFSLQTILHVYLIYFCMSVSCIIISMCXCLINDRDNLCTSLIILSAALFSSTSAYFIIQCNFSVTF
Ga0272438_10011678	F040408	N/A	MYDYESIFDICIKNNVMKEEVSAAKKHVKMLQDVQNILMQXX