Scaffold Ga0272438_1001083

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001083
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39842
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (9.30%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Onygenales → Ajellomycetaceae → Emmonsia → Emmonsia crescens (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F028367	Metagenome	191	Y
F038009	Metagenome	166	Y
F070710	Metagenome	122	Y
F087979	Metagenome	109	Y
F089602	Metagenome	108	Y
F094622	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100108312	F094622	N/A	MFTLKQRVYLNDSNSKDNVTAIIMKMNXELNKRLKRSTLVITHHDELKELVTKMKHFTNIVTVNQEYHEKIYKIYSDNQTFLKTVKVMISTKDQTHLQXV
Ga0272438_100108323	F028367	GAG	LCKLDEILSKENYFEKSFLIDAYFISQNXSFSLRSLIDSDSVIYMIIHSNLVNKVCEKLKIQPISLTKKKLIRDYDEKIFKKIITHKILLNLIIESHKKLTVSMLITDIDHHEVILSKLXMNKNEILLNMQNDVIVFSNQLNTSISIFSIFLNSKHSSXSQSTSFSSIT
Ga0272438_100108331	F070710	N/A	MIKQSFLQILQYNIRKSLKIQKLFLINREVHDFDIIIIQKQSCNINDMQSFNSAYNFFYLVKNTSSQLRTCIYVNKYLRLDQXVIETAESNICLIRILTRNTDDETQTLQLINIYNLYSLFFTFTKRSLIISRLSKLLKNDCK
Ga0272438_100108336	F038009	N/A	MSNIIKASNFQLNYIKLYKRSIELICLRNNRSFKEKRILTLDFXXISFLNDLKNTIKSFLFQMRNKIKQSLFLVNELNISLLLMSKXEVILLLVSKXETELLLASKLRTELLLVSKLKTELLLSSEXETKLLLASKLSAELLLVNNL
Ga0272438_100108338	F001951	N/A	MIIMKLKFINSSRNKKERDEDTVETTVTKMMIFELKELLVNAKIFLILMNKMMIKTK
Ga0272438_100108339	F089602	N/A	MKDEXLSFIEISSEENNDLSEIIDITLQTVNQXKIFHQRTFFLLIKKIVIVDKVIHVLLQSFTKI
Ga0272438_100108341	F087979	N/A	MKEKNESSTFIYMNQAKSRLDSSFIDLRLQKFMHIIKIIKTKLLKLN