Scaffold Ga0272438_1001013

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1001013
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41464
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (8.89%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F008115	Metagenome	338	Y
F021452	Metagenome	218	Y
F028367	Metagenome	191	Y
F036036	Metagenome	170	Y
F038009	Metagenome	166	Y
F042102	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100101310	F028367	N/A	LKENYFEKSFLIDTHLISQNXSFNLHSLINSDLIIYMIIHFNLIDKVCKKLKIQFISLTKEKLIKNYDEKIFKKIITHKILFNLIIKSHKKLIISMLIVDIDHYEVILSKFXMNKNKILLNMQNDIIVFLNQLNTSILLFSISFNSKHLNXSXSSLFFSIIQIKIFIMLKXFI
Ga0272438_100101329	F036036	N/A	MLISLFHHSFLCFDQSFTSEDQCFVHLFKYILDSIDLQAFANAFILNDVRIEAHMRMKALVHEEENQEDDXKQDVIVDKLDHE
Ga0272438_100101333	F000597	N/A	MSMSDDSFASESLTIECILSSNKISYSLKSLIDIKAADYSFIDEVIVQIVYDQLQIKFLILIKAKSIQEFNDHYTKKLITYVIYLNLTI
Ga0272438_100101334	F003820	N/A	LQNTLSICLKNFTLLIHLRIFLQDVNSKQRVNYQLRSERCIVIIKVTVISDKCATFLSVTTSIINYVKLTIFSIFKSVRLLIICYICKILNHLFKNCFQLNKINTFASYAFIFHLHEIIISKNKENEKMFFKNSKTKN
Ga0272438_100101335	F042102	N/A	MNVLLFDYKMIKISISIELNAXISIHKADDIIIFIKYICQQHDIKIKIYNDMIQMLKDVNEINIMLKITQTRLQKENRNKNVIIHHLKAALSXQSTLIFENQFLKLIKLLNSSLFENSLQNVNNXLSXMXNKLKINKNHFSIEELKIAYIESXVSEAAIKHIAFQMKNMFLNSFLEVEEVLLIINKMYNDFNHHYTTQRQYLKLYQNKIFFHEFXMKFQRFSAELKYNNEILLNDLQHKISSDFQXATLNEXIMNLNEFIDICMQVDVRLTELNTXSVIKASATQVAYSVFSTSTAQLTSSVSSXKKLRRLNLDSIQKELFKKELCFKCKKLKHRIYDYLKMIQVHKIVASSKNDLFSLK
Ga0272438_100101336	F021452	N/A	MIESNILIFCFINMSDDSFNFKLFNIDIILNNREKIFKSFALINIKVINMIFIDESLMSKLCECFDIQSISLSKSKLIQLYDEISDQKLITYTLYTLIMI
Ga0272438_10010136	F038009	N/A	MLTRFVTVLSFQLNYVKLYKRSIELICSRNNRSFKEKRISTLDFXXVFFLNDLKNMIKSFLFQIKDKIKQDLFFMNKLSINXLFMSKREVILLLVSKXETELLFASELRTELLLVSKLKTELLLSSEXEIKLLLASKLKTVRIVSIXVNQRKSELNNAXSLKITITEY
Ga0272438_10010137	F008115	N/A	MNFITELSLSEDYNIICTIICHLIKECHYVSCHXENNDISVEETIXIMLXNVYQLHDLLSSIVSNRNFQFILTMXKSLCKXLRITASLFTVYHLKINDQTKRVNQDIERELRIYCNYMQNDXVKXIFMMKFSDNFNIFSIISMISFYFNKDFHSRMSFDSDMIDYKIIRERLKARKADDIIIXMKKLLSFDRQQLKKTKLIIEAQINKHKRDVIYEIKNXVXLFFRNVKITKSCKDLKDKQLELYQIIVKARIFYHFHLSISMKHLHSMFNLKLLQSYSENFLSEQHVEFLKLIIIDEDDDEHXKINYILNFRRYQDQIQYKIKXKDLNKNNELYYVDKDEFDDFKKVLNEFYMLYSRKS