Scaffold Ga0272438_1000912

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000912
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44108
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (23.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F004755	Metagenome	424	Y
F021896	Metagenome	216	Y
F048018	Metagenome	148	Y
F089602	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100091216	F048018	GAG	MIXRRSLSELSTYFLSXKYKXFSCSLHSIREILLXCHASLXSTSIIXAANLLLISTYFHNVXVKVSAESLSRFRVSXSSXDSMFSTSNSSISKFMKVKICKDAEITKNKCNXAEFKMMIYDXNFITLMLKMSKMRFSTILRFKTXVFRIVXCXY
Ga0272438_100091218	F021896	N/A	MMKNNLKSEDFLKNVECNLRFLKSDKEYIFSNETSERSSYSTIIIDESFIKVRKI
Ga0272438_100091225	F001951	N/A	MTIMKLRFVDSLKDEKERNKDTVETTITKIMILKLKELLIDAKMFLTLMNKTMTKMKQD
Ga0272438_100091226	F089602	N/A	MKNEXLSFIKILSEEDNNLSEIIDIVLQIVNQQEIFHQRTFFLLIKKIVVVNKAIHVLLQSFMKI
Ga0272438_100091250	F004755	N/A	LKELAELFNDSDKKVNFRKEYYNLIQESKKFSKFYTQFQQLSFYLKYHEKQLIIDLKDKINFRLQFIXIDQLVQSDFLKEIHIYLIHLNNDQRVIXKIKNKVNLIKRVDNLSKIIFHKAVVTQLVNHSKSDHLKSRDAVLTSVKEADVLVETCFICHKSDHSSRECSDQSIRINAVNNEYNRFEFDFNSNFDSKN