Scaffold Ga0272438_1000891

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000891
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44594
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (18.75%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F005901	Metagenome	386	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F011463	Metagenome	290	Y
F048018	Metagenome	148	Y
F080690	Metagenome	114	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100089121	F009580	N/A	MICIQISERDLTQRLNFSCRQRDFFIYTDDITVVDVHDMQSEELLIXAFFSDFAQMLQLAVVAQLSLVEDFLDLRNDQNLILNDDNDKA
Ga0272438_100089123	F008735	N/A	VSLLIYDESXLDIDDLDSMKEIMIIVHIHALYQTLLSCIQSIFILFILRYVKKLLKSRSDEDNNRVRKEMNDKKRLIVQDLCDDLSYHRKRLKIQFYINXRTENDEQEXSDNIMLLNLILKLLHYAKDLNXIFNHTLSELFNSILIVDQEIVRQLYLSERVTKXDFNVXKRCRKCRSFIMSEMRLN
Ga0272438_100089128	F080690	N/A	LFSFIVFNSSIYIELNSQFLMMITQIIAQILNNQSLVVIHLSANFVTVFITFKFKKLLDISEYEKNKDQLNAXEQSLIQCMNMNDDHYFFYXVKIIYVESRLIINKKTHNLMNQYXINDLCIIFIFANXXHKLHHCCDNSFKTKNAHLYLCETLKQDMNSFINYYNLFYQKKECSLMKDFLLIDCLKRNVNYFTQVIIFF
Ga0272438_100089129	F001951	N/A	MTKFKFIDSSRNEREKDEDTVETTVTKMIIFELKELLIDAKILLTLMNEMMMKMK
Ga0272438_100089132	F048018	N/A	VSXMIXRRNLSELSMYFLSXKYRXFSCSSHSIRKILLXYHASLQSTSIIXAANLSLISICFHNVXVRISIKSSSRFRISXSSXDLTSSTLNSSIFRFMKVKICESAEIIKNKYNXTESKVMIYDXSFMTLMLKMSRAKFLTILRFKTXIFRIVXCXYXCQELNVFFFLKRSFEXCVKAFDLSSILSRC
Ga0272438_100089138	F005901	N/A	MMFRLEDDAAKHIFARRCFDSLNSFTLIYELFDHLKEIYNELNKNXKSRREYNALTQADKSFNVFYFDFMKLFSYLNYDDCILMNNLQEKINNHLQNALSICSENFTSLFHLKKFLQDVNNKQRVNYQLRSERRTVIVKVTVISDKHTTSLSMMTLIINYVRSTIFSISESARSFIICYICKISSHLFKNCSQNKIDISTSQAFTSRLHEIVILKNKENEKMSSFKNSETKN
Ga0272438_100089140	F011463	N/A	MKQIIEAQVNKHKRDVIYEVNDXVXLFSRNIKTIRSCKNLKDKQLKLYQITVKVEIFYHLRLSISMKQLHLMFSSKLLRSYFDNLLSEQHSESSRFLTIENDEHXEIDDILNSRXYXDQIQYKIKXTRLDXNDEXYYVDKEEFKSLKEVLVEFHKLYSDKSH
Ga0272438_100089148	F100079	N/A	MFKHKHSIHKXYADEKTSLKEKRHKRINKEXLNYAVXLKV