Scaffold Ga0272438_1000887

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000887
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44677
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (31.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F002432	Metagenome	559	Y
F037509	Metagenome	167	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100088712	F037509	N/A	MILISLFIQVHSTDNKMSIKKFVYLMIDDIKRQNNIKKSIKSTRTYNHVIAKESITQSVASVQID
Ga0272438_100088728	F098340	N/A	MIEVVAYXTLVKKKNVKIFTLIISEINKMLNSIKDSAKLNEMISVMSLKKLKKKLLIVYYDFLNVFDREKTTQLFLHXSYDYKIELENES
Ga0272438_100088734	F002432	N/A	MQNDXTKXLSMIKFSENFNIFLIISMTLFYFNKSFHSXMNFNSDTTDYKITHERLEARKANDIIIQMKELLSFDHQQLKKTKQIIEAQVNKHRXDVIYEVNDXVXLFFRNIKTTRSCKNLKDKQLKLYQITVKVEIFYHLHLLISMKQLHSMFNLKLLCSYFNDFLSEQHSKSFRFLTIKDDEC
Ga0272438_100088741	F001253	GAG	VTFIKNMMKDVLISSTISSSNDLFVSKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVCNHLQIQSLSLIKLKSIREFNDHYAKKLITYAIYSNLTV