Scaffold Ga0272438_1000869

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000869
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45217
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (14.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008735	Metagenome	328	Y
F020121	Metagenome	225	Y
F038009	Metagenome	166	Y
F040408	Metagenome	161	Y
F044227	Metagenome	154	Y
F076668	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100086911	F044227	N/A	MMQLQIKSSNDEACIYALLELIASAIKNVTRYXLLKLLNNHYYHEEFQSSNKDDDANEALKAI
Ga0272438_100086912	F020121	GAG	MLIAQIIYEFNVNLSHCSCSRYFIEDKVXLNACNFNITRLVVKLDDHNVDLFKIKRVFKNNSLIIELNLSAFMKIHSIFHVTLLNHITSDFLSNQHQKSQELIIVKNNERFXYVNSILNFKYDKHYNSSLLKYYINXKDHFFTXESFHLLNNCEQALDEYHLVNSVVKESHVLSCVMSQCQC
Ga0272438_100086915	F038009	GAG	MIKALNSQLDYVKLYRRSIELICSRNNRSFRKKRILTLDFXXVFFLNDLKNTTRSFLFQTKDKIERVLSSVNELSINXLFVSERRVILLLVSRXKTELLLVSELRTELLLVSKLKTELLLLSEXETRLLLASKLKTELLLSSE
Ga0272438_10008692	F008735	N/A	VSLLIYDESXLNINNLDSMKEIMIVIHVHALYQTLLSCIQSIFIFLIFKYVEKLLESRSDKDSNKVCRKMNDKKRLIIQDLCDDLSYHHKKLRIQLYINXRTENDKXEQDDDIMLLNLILKLLHYAKDLDXIFNYTLSKLFNSMLIVNQEIVKXLHLSERITRXDFNVXKRCRKCKSFIMSETELN
Ga0272438_100086927	F040408	N/A	MYDYKSIFDIHIENDAIKEKVSAAKKRVEMLQNVQNTLMQ
Ga0272438_10008693	F001951	N/A	MMIMTELRFIDSSKDEKERDKDTVETTVTEVMIFEFKKLLVDAKMLLTLMNKMIMKMKQD
Ga0272438_100086939	F076668	N/A	MTCLLLTSXFLACESVHKRLMNSNNNYAIKETISVFAFIKKIMHMNNALLIDMLMLCNRKLKDATNQKXSHCVRFENIRSQLKISFLKXSLNDLXERLCTTVLAQICYHTIIAFSALSXVLFKKSLKTLCASLXKVSALLFHIITFVVEFSLIFCFMQTSTXQQFMSNASSFKIEIXNLXRISX