Scaffold Ga0272438_1000720

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000720
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50195
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (11.48%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F011463	Metagenome	290	Y
F035571	Metagenome	171	Y
F038484	Metagenome	165	Y
F046102	Metagenome	151	Y
F055317	Metagenome	138	Y
F070710	Metagenome	122	Y
F075494	Metagenome	118	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100072015	F055317	N/A	MFTDEKNSTXENXSLDIXEKLVMNVNIFSNKLYKLSYINFQLADDVIKVTQVRRDFNCDNFYLTVNELLKKLAQSFHDSDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVINLKNKINFRLXIFXTAQMKSLIKLFDIRNHLIRLNNEHKAVQEIKNKLLKCDDSKIIISKATIAVQSSTLKFNXSKSRSAVLTSIKNANVLVEICFVCYKSGHSFRECLNQFIKVNTVDENYNHFKLNTESEFKSKN
Ga0272438_100072017	F046102	N/A	MKDVLISSTISSSNNFFASKSLTTECVLSSNEISYSLKSLIDIEAADYSFINELITQNVCDHLQIESLSLIKLKSIRKFNDHYAKKLITYAIYLNLTVQDHIKRFVFMLITRLDQHQMILEKTXMNKIKMTIDMKNDRLQFSSFKTHIKASIKAHSTVLSSKKIMIEQKSLIST
Ga0272438_10007202	F075494	N/A	MFVHSVNKRRYSAKHVKSRSQDKIYCTXVINEVKKMSVHNVNENMNTCSAMHVRSMLLKIMLLTVQEMHLDEVHFLRNKISQFESITLKSINIETSTYRNQNVVKKQLNSVVETVDCKQLISHVIVKVLTKLITLNQVLKFNLSTQLEKC
Ga0272438_100072022	F010214	GAG	LFIYDTSSLLCSSLTIFYKMMFXFNSQFEDERCFLHIRDTHDCNVCKAAFFYSMIVIYCAEKYVMKERRVQXKDKVXLYXIILFFSXFNLYHVDVEXIVSINMQSQSFNDXLXSIEENAFXSFFCALDFSHR
Ga0272438_100072030	F035571	N/A	MLTLLNAFVTXCRIXFYKVSSLHFLFDSSSSLSRXCQTDASNAISDLITVEYICFAFVKIASHVKTSKXLSVNILVMXFTSICXRCMSHYNFMFSXIFKTCMFDFNLIIKLSICMLVIMLNFLDFLVKCVSSYFSDANVTSXVQTHFA
Ga0272438_100072039	F100079	N/A	MFKHRHFICKQYADEKTLLKKEKYKRISKEXLNYVIXLKV
Ga0272438_100072048	F038484	N/A	MCSILIYIMRMLSAFXRSSRIFIILLLRCNLYAEIVLMFATHSLYFSHHXFHXSLXYCVIAMLSLVEIIVRKRIHYLHLNCIFTSSXIKTFRSTIFLMMSKQEMTXLTFIKXICISLHACLISCVQSLIQLCNMILFCSMFRXTCNKLMYIFVSKVSMFTLLNASATXCKIXFXSVSSLHSLLNNSSFLSCXCQTNASNAISDLTIVKYTCFTFVKIASYVKTSRXLSISILMTXFIFIYQRCMSHCSFMFSCIFKTHMSDFNLITKLSIYMLIIMLNLFDFLVKCVSSYFSDANVTSXVQVYFTQTSCALLSVLQISSVNLL
Ga0272438_100072057	F070710	N/A	MRQILNDXEYSKSLLFAESTTVTNNSMIKQFFLQILQYNIRKSLKIQKSFLINREVHNFDIIVIQKQSCNINDMQSFNSAHNFFYLVKNTSSQSRTCIYVNKCLRLNQXVIETVESDICLIRILTCNTDNEMQTLQLINIYNSCSLFFTFTEKSLIISCLSELFKNDCK
Ga0272438_10007209	F011463	N/A	MKELLNFDHQQLKKTKLIIEAQINKHKQDIIYEINDQIXLSFRNVKITRSCKNLKDKQLDFYSIIVKVKTFYHLCLFTSMKHIHLMFSFKILQSYSNDSLSDQHIKSLRSITIKDKKHXKINDILNFKCYXDRMQYKVKXKDLDKDNDXYYINKEEFNDFEKVLNEFHTLHLNKSR