NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000690

Scaffold Ga0272438_1000690


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000690 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51114
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (21.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F037509Metagenome167Y
F055317Metagenome138Y
F070712Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100069040F037509N/AMILISLFIQVHSTNNEMNIKKFVYLMINDIERQNNIKKSMKSMKTYDHVIAREFIAQSVASVQID
Ga0272438_100069041F070712GAGMSDIKEKKFLNKVRKQVIFAEKQDSLNLYRKIEVTTLVDHSKSHDAILINVKDIDLQAEICFICHKSDYTSRECSDQTSRINALENHEFDXFTSNFESDFDSKN
Ga0272438_100069044F055317N/AMTFKNTSDKDQAFTDFLQXTRSQVFSSIVDSQHASSFIAFNESNAEIIILNDIKVXKKCIYDLNKETDHLVKMKQXDKSEIQQLKAKLQAFTAITINVIITALLIVIYFEXFKYHKILDSLMFIDEKNSTXENXSLDIQEKLVMNVNIFSNELYKLSYINSXLADDVVEVTQVRRDLNCDNLYLTVNELLEKLAQSFHDFDKKDNYHKEYINLIQESKKFSDFFNQFQQLYIYLKYQKNVLVVDLKNKINSRLXIFXTAQMKLLIKLSDIXNYLIRLNNEHRAVQEIKNKLLKCNDSKIIISKAIITVQSSALKSDXSKLRSAVLTSIKNADVLVETCFICHKSDHSFREYLNQSIKVNAVDENYDRFKLNTESKFKSKN
Ga0272438_100069051F008668N/AMSFNSDTTDYETTHERLEAKKANNIVIXMKELFNFDHQQLKKTKQIIKA
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