Scaffold Ga0272438_1000621

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000621
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53756
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (88.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018488	Metagenome	234	Y
F034417	Metagenome	174	Y
F035137	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100062116	F018488	AGAAGG	MREPTRRPPVSGPGWNERAAVALLVLVAGHLLAVEPPAVAGPLTPDRLARVVAAHDLPALVAVCEGSPSDQVRHGAHQLRRLIRAGQAQVYQRVLPGLPVALVDPYFRLDLARAAARAGLDLFPPPRPGG
Ga0272438_100062142	F034417	AGGAG	MPWAVTKPRSAWLAQAKTAWAALAPQAPEGAQLRDLAAIDHENVAWLIEALTALKPGEVSQELQDLAGLRPVGEVLGMPDDADDGEDW
Ga0272438_100062159	F035137	AGGAG	MRGKWERKSDTLWTYRLAGAARPYGYVVQYRDTGRSDADWDATVTTGRLDDDTTVAERVSFDKAKGAIEQYAQQHADRV