Scaffold Ga0272438_1000607

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000607
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54325
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (12.07%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F023763	Metagenome	208	Y
F036035	Metagenome	170	Y
F038008	Metagenome	166	Y
F041516	Metagenome	159	Y
F075493	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100060715	F036035	N/A	MKDKTKDDAIXREHHKLEKASRNQKHDDSNHLNDIFNKHTESISNCDIIEESNERERK
Ga0272438_100060716	F038008	N/A	MKETFKQMKMNRSHLYTAIFXSKSLKIIIVANKKMLIKQHNLNTFALKQRVYLNNSNSRNNVTAIAMKMNXELNKRLRKLTLVITHHDELKRLVAKVKHFTDVATANQEYHEKIYKVYNDSQTFLKTVKVMISTKD
Ga0272438_100060720	F041516	N/A	MIQKAIHIYEVYNLSFRNHEIIHEKENLSNIEKTLHMLKESILVKDFNLHHFTXKESFYS
Ga0272438_100060733	F001253	N/A	MKNVLISSTTSSLNDLFASKSLTTECVLSNNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLITHAIYLNLTV
Ga0272438_100060748	F075493	N/A	MQSVXAMHEYMLCRLMTSFAVTSQAIHAXNISKVQINVQIYAFNSDMHCKSAFCFLKIVMHLYHSIAQMQSLCXDCFNVCNAFSVLFSSLISLIFVILRYCDAIACXNHCEEESASFASXLYLRIFLNEDIQKYYFLNNKXARNDVINSRQMSMY
Ga0272438_10006079	F023763	N/A	MLRIECILLFRKIFXATCQNIQLIINLVKMINDVIVKFKQKLTLMSLMIIQLFSXHEILKIFVICDHFDKINKVFEFXSLFLESTNNDHKFFIVDFIVTLDXVMLFQKVSNXMKNLILIILRKNVFEYIVQNIDFYHNFMIXIIIIKNNLESEDFLKIVECNLTFLKSDKEYIFLMK