Scaffold Ga0272438_1000563

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000563
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55744
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (16.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008169	Metagenome	337	Y
F010214	Metagenome	306	Y
F028368	Metagenome	191	Y
F032884	Metagenome	178	Y
F070710	Metagenome	122	Y
F075493	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100056317	F032884	GAG	MTIRNERLEREECKETKKNESTMTRVERERLYAQTIDVIDQQEDEKQRLXLYYM
Ga0272438_10005633	F075493	N/A	MRSVRAVHEYMLRRLMTSFAVASRAIHAXNVSRVQINIQIYAFNSDVHCKNAFCFLKIITHLYHFIAQMQSLCXNCIDICDAFSVLFPSLISLILVILLYCDAIACXNYCKEESASSASQLYLRIFLNEDIQKYYFLDDE
Ga0272438_100056333	F002432	N/A	MQNDXVKXISMMKFSDNFNIFSITSMTFFYFNKEFHLXMSFNSDTTDYETTCERLEARKADDIVIQMKELLSFNHQQLKKTKLIIKVQINKHKRDITYEVNDXIXLSFRNIKTTRLCKDLKNKQLNLYQITVKVSIFYYLHLSVSMKHLHSMFSSKLLQLYSEDSLSEQHSESLRSITIKDDKHXKINDILNFRCYRDQIQYKIKXTNLDRNNKXYYVDKEKFNDSEKVLNEFHKLYSNKSR
Ga0272438_100056337	F010214	GAG	MRVSVLFDYDASSLFCSSLTIFYTTMFRFDSRFEDERRFLCIRDARDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVILSFSXFDLCHVDVEXTVSIDVRSQSFNVXLXSMKENAFXSFSXALDFSRE
Ga0272438_100056338	F028368	N/A	LCKLDEILLKENYFEKLFLINVHLISQNQSFSLHSLINSDSIIYIIVHFNLVNKVCKKLEIQSISLTKEKLIRDYDEKIFKKIITHKILFNLIIESYKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNNVIVFFNQLNTSISVFSILFNSKHSSXSRLSSFSSIIQTKIFMMLKXFISITAQKESFLIQNINAALFKTLLNHSKKNQIKVFALFMININKEIAYNTQCNLNALNVSLIDETTQNLKDIKAKLSSKYHEFLDVFDXTQLSXQRDSSVRDVDYESFDSILCSNRSQKSQEISIQRSSNDVRTLRDQKSHHAEFSLTRQHFF
Ga0272438_100056339	F008169	AGAAG	LKTRLQAKENTSSAFIYSERSRSQKIPNSSLFTDEKNSIXKNXYGKIQNKLKINVNLFLNERVKLSYIHSRLFDDAAEITQARCKHDCVNLYKIVDDLLKELAQLFNDLNKKVNFRKEYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIIDLKDKINSHLXFIXVNQLVQFDFLKEIHFYLIHLNNNQRVIQEIKNKLKRVNDLSKTIFHKATVVTQSVDHSKSDQLKSRDAILTSIKKADVLVEICFIYHKLDHSFKECLNQSTKINAVNNEYDHFDFDSNFDSKN
Ga0272438_10005637	F070710	N/A	MIKQSFLQILQYNIRKSLRIQESFLIDKEIREFNIVAIQKQDHNNNDLQSFSSAHNFFHLMKNSSSQLRTCIYINKHLRLNQXIVETAESNICLIRILTCNTDDKTQMLKILNVYNSCSLFTTFTKKSSIISRLNKLLKNDCEQLIIKDFNLHHFH