Scaffold Ga0272438_1000512

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000512
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58523
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (21.43%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F008735	Metagenome	328	Y
F010214	Metagenome	306	Y
F020121	Metagenome	225	Y
F038484	Metagenome	165	Y
F057011	Metagenome	136	Y
F071806	Metagenome	121	Y
F086375	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100051215	F001951	N/A	MIIMKLKFIDSLKDKKERDKDIVKITVIKMMIFEFKELLVNAKMLLTLMNEIMMKTKRD
Ga0272438_100051216	F008735	N/A	VNLLIYDESXLNINDFNSMKEIMIIIHVHVLYQTLLSCIQLIFVFLIIKYVKKLLESKSNDDSDRIYKEVNDERRLIIQDLCNDLSYHHKRLRIQFYIDXRTENDEXRXNDNIMLLNLILKLLHYVKDNNNNNKFIHSCDID
Ga0272438_100051219	F010214	GAG	VLFIYDALSLFCSLLMIFYTTMFEFNLXFKDERCFLCTCDAHDCNICKAVFSYSMIVIHCTEKYVMKERFTXXEDRVXLYXVTLFFSXFDLYHVNVEXIVSINVQSQSFDIXLXLIKENVFXSFSXALDFSRR
Ga0272438_100051220	F010214	GAG	MRVSVLFDYDASSLLCSSLTIFYTTMSRFDSXFEDERRFLCIRDARDCNVRRAVFSYSMIVIHXAEKYVMKERRTRXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFSRR
Ga0272438_100051223	F038484	N/A	MRSILMYIARVLSAFXRSSRIFIVLLLRCNLCAEIALMSATRSLYFFHRXFYXSLXYCIIAMLSLVEIIVKKRMYHLRLDYIFAPSXMKTFRSTIFLMTSEREMTRLTLVKXARISSHACLISCVRSLTQLCSVILFCSMFRXTCSELVYVSVSRVSMFTLLNVSTTXCRVXFXSVSSLHSLLDSSSFLSRXCQTDASNAISDLTTAEYTCLVFVKIALHVKTLRRLSVSILVTXFASICXKCASHCSFVFSCISRTRTSDFNLITELSICMLVVMSNLFDFLVKCVSLYFSDANVASXMQAHFAQTSCALLSVLQISSVNLS
Ga0272438_10005123	F002432	GAG	MIKFSENFNIFSIISMISFYFNNNFHSXMSFNSDTTDYETTCECLEARKADDIFIXMKELLIFDHQQLEKTKQIIKTQINKQKXDVIYEVNDXVXLFSRNIKTTKSCKDLKDKQLEFYQITVKVEIFYHLHLSISIKQLHSMFSLKLLHSYS
Ga0272438_100051230	F086375	N/A	MFTLFINSKFIASXTHDENXFDEIKEHYKRQNNDRVIIFKRLYKLRQFNVXKEVNETDKAVMKDNVRDQVEQECKNKSMHDNASQ
Ga0272438_100051249	F071806	N/A	MKLQLQIITLDSVQLHLFSIISTFLQILAFMNLEIKEFNIENIKSQLDQDILNLDEDSADILTQTL
Ga0272438_10005125	F057011	N/A	LCNLVEILLKENYFEKSFLIDTALIFQSESFSLRFLIDSDFIVYILIHTKLVDKVCKKLEIQFISLTKEKLIXDYDEKLSKKTITHKILLNLTIESHKELTVSMLIADIEHHKVILSKLXINKNEILLNMQHDAIMFSDQLNTSISIFSILLNTKHLSXSXSTLISSAAYSNVFKILKHSVLIVQKESFLIQNIDVISFQALIKXLKKNHTKLFAMFIKNINREIVYNT
Ga0272438_100051253	F001951	N/A	MIMTKFRFIDSLKDEKERDEDTVKTTVTKIMIFEFKELLVDAKMFLTLMNKMIIKMK
Ga0272438_10005129	F020121	N/A	MFQTXNKLINVKEFIKKMKKLTEHLHDEMLIAQIIYEFNVNLFRCSCSKYFVKDEVXLNVCNLNIAYFVVKLNDYNVDFFKIKHVFKNNSLIIELNLSEFMKIHSIFHVILLNHITSDFLLNQRQKSXELIIIENDERFXYVNSILNFKHDRCYNSSLLKYYVD