Scaffold Ga0272438_1000448

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000448
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61833
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (22.54%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008735	Metagenome	328	Y
F020121	Metagenome	225	Y
F023763	Metagenome	208	Y
F038009	Metagenome	166	Y
F075494	Metagenome	118	Y
F087979	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10004482	F075494	N/A	VINDVKKTFVHNVSEQRYSAKHVESKSQDEIYYTXVISEVKKMSVHNVSENTSTCSAMHVRSMLLRVMTLAVRETHLNKVHFLRDRISQFESTTLRSTDVETLTHKDHNIVEKQLNSVAETVDCKQLISHAIVKVLTIYEMIYNFSNKFVVKLIKILQQEDEFAVRLKADEMMSIXKSIGKIVRRKKVDISXFLPTFPELAVNLMCQLTIEISXFSQLLADY
Ga0272438_100044834	F008735	N/A	MSLLIYDESXLDINDLDLMREIMIVVYVHALYQTLLSNIQSIFVSFIFKYVEKLFEFNENRDSNRVCKNLNNERRLNMQSLYNDLNYHHEKLKIQFLIDXRTKSDEXEQDDNIMLLNLILKLAHYMKDLNXIFDYTLSKLFSNMLIINQEMIRLLHLSEKIIKXDFNVXKCCRKCKSFIMSKTRLN
Ga0272438_100044839	F008735	N/A	MREVAIIVYVHALYQTLLSDIQSIFVSFIFKYIEKLFKSNENRDNDRVCREVNDKRRLIVQDLCNDLRYHCKKLRIQFYINXRTENNEXKXNNDIMLSNLILKLLHCAKDLDXIFDHTLSELFNSTLIINQKIVRXLHLSKRITRXDFNVXKRCRKCRSFIMSKIKLN
Ga0272438_100044842	F038009	GAG	MIKALSFQLNYVKLYKRLIQLICLKNNRSSREKRILTLDFXXVFFLNDLKNTTRSFLFQTRDKTERDLFSVNELNNSXLLVSEREVILLLVSRRKTELLLASELRTELLLVSELKAELLLSSELRTRLLLASELKTELLLSSEXETKLLFASKLSAELLLVNDL
Ga0272438_100044861	F087979	N/A	MKEKNENSTFIYMNXAESRLNNSSIDLKLQKFMHTAEMIKTKLLKLD
Ga0272438_100044862	F008735	N/A	MSLLIYDELXLDINNLDSMREIIIIIYVHVLYQTLLSDIQLIFVFLILRYIEKLFEFNESQDSNRVCRNLNDKKRLIMQSLCNDLSYHHKKLRVQLLINXRTRSDEXEXSDNIMLSNLILKLAHYAKDFNXVFDHTLNELFSSILIVIQEMMRLLHLSEKITRXDFNVXKCCRKCRFFIMLKTRLN
Ga0272438_100044866	F023763	N/A	MSFQNCLMLILISRIECILLFKKIFXATCQSIQLIIDLVEIISDVIVKSRQKLTSMSLMMTQLLNXHEILKIFMIRDHLDRIDKVFKLXSSFLKSTNNDHKFFIIDFVVTLNXVMLLXKVSDXMKNLILIILRKNVFEHIVQSIDFYHNLVIXIIMMKNNLESEDFLKNVECNLTFLKSDKEYIFFDEMSE
Ga0272438_100044869	F020121	N/A	MKKLTEHLCDEIFIAQIIYEFNVNFFRRSCFKYFVEDEVXLNVCNLSIICFIVKLNDHNIDFFKIKCIFENNSLIIELNLSTFMKIHSIFHVILLNHIASDFLSSQRQKSXELIVIKNDERFXYVNSILNFKHNRCYNSSLLKYYINXKDHFSTXKSFHLLNNNEQAFNEYHLVNSVTEESHVLSCVISQCQCQEL
Ga0272438_100044871	F002432	N/A	SMMKFSDNFNIFSITSMIFFYFNKEFHPRMSFDSDTTDYETTCERLEVRKADDIVIXMKELLNFDRQQLKKTKLIIEVQINKHRRDVIYEVDDXIXLSSRNVKTTRFCKDLKDKQLDLYQITVKVNIFYHLRLSVSMKHLHSMFSSKLLRSYSENSLSEQHSELFRSITIEDDEHXEIDDILNFRRYRDRIQYKVKXTDLDRDDEXYYVDKGKFDDSEKVLNEFHKLYSNKPR