Scaffold Ga0272438_1000345

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000345
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70763
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (31.51%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F008735	Metagenome	328	Y
F064252	Metagenome	128	Y
F070710	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100034519	F064252	GAG	LSLKKKQRSANQSRSRQPTKPLSRQSIENHTXRESITLFDNDHHKSFKFSNSSVFIDEDESTXDSXRIKIDDKLQANVNHFVDETICIVYVISRLEDDAAEHIFAXHHHDASHSYISIYELLEHLEEIYDKLNKNXKCRRKYNALRQADKSFNVFYFDFMKLFSYLEYDDCILINDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCTVIVKVTVVSDKRATSLSVTTLIINYVKSTIFSTSESARSSIICYICKTLDRLFKNCSQLNKINTSASCAFISRLHEIVILKNKEKKKMSFKNSEAKN
Ga0272438_10003455	F070710	GAG	MINQKTKQILDDXKYSKSLLFAESTTAINNFMIKQSFLQILQYNIRKSLRIQKSFLIDKEVYDFDIVVIQKQSCNINNMQSFNSVHNFFSLVKNTSSQLRTCIYVNKCLRLNQXVIETAESDICLIRILTCNTDNETQTLQLINVYNSCSLFFKSTEKSSIISHLSELLKDDCKQLIMKDFNLHHSHSRRXRCFTQHAAINSLLDIVTNVKLKLLLKSNIITCKTHN
Ga0272438_100034553	F000597	N/A	MSMSDDSFASESLTTECVLSSNEINYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIQEFNDHYAKKLITHAIYSNLTVQDHTIDTASMLITQLDQYQMIFEKIXMNKINLVIDMQNNFLRF
Ga0272438_100034561	F008735	N/A	MREITIIVHVHALYQTLLSCIQSIFVPLILRYVEKLLESRSDDDSDRVRKRMNDEERLIVQDLCNDLSYHCKKLRIQFYINXKTENDERKRNDNIMLSNLVLKLLHCAKDLDXIFDHTLSELFNSTLIVDREIVRXLHLSERVTRRDFNVXKRCRKCRSFVMSETRLN
Ga0272438_100034562	F001951	GAG	MTMTKLRFIDSLRDERERDEDTVETTVTEMMIFELKELLVDAEMLLTLTNEMMIKMKRG