Scaffold Ga0272438_1000257

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000257
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81484
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (18.09%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021216	Metagenome	219	Y
F040408	Metagenome	161	Y
F050043	Metagenome	145	Y
F065268	Metagenome	127	Y
F071806	Metagenome	121	Y
F075494	Metagenome	118	Y
F094624	Metagenome	105	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100025726	F050043	N/A	MIKIXSXLKEDEVEENEKLRRTERAINKSTIIIHSCLYFIISTTLFTXKINNVYALTTRHHCCHLHQLHITYTIYNVIYTHYNXRXIIIQLKVSLFLVFSQKFKDFYRKLLEXINECTSSFIRINKDINYXDXEXTHLEKKTIVMMNXHIEARIRDXVEDQIXVSSETLXLCQDIV
Ga0272438_100025727	F040408	N/A	MYDYKLIFDIYIENDAMKEEVSAAKEYIEMLQNVQNTLMQ
Ga0272438_100025739	F075494	GAG	MFIHSVSERRYSVDHVKSMSLDEIYCTRVINEVEKMSVHSISENTSTCSAMHVRSMLLRIMILAVQKMHLNEVHFSRDRISRSESENLKRHDDEMLTHKDCNVAEKQLNSVAETVDCKQLISHAIVRVLIIHETIYNFSSKFIVELIKIL
Ga0272438_100025741	F040408	N/A	MYDYESIFDICIKNDAMKEEVSAAKERVEMLQDMQNTLMQ
Ga0272438_100025743	F050043	N/A	MIKIXSXLKEDEVEENEKLKEIERAINKSTIIIHSCLHFIVLITLFTQKINNVYALTTRHYCCHLHQLHITYTIYNVIYTHYNXRXIIIQSKVSLFLVFSQKFEDFYRELLEXINECTSSFIRINKDINYXDREXTHLEKKTIVMMNXHIEARIRDXVEDQIXVSSETLXLCQDIV
Ga0272438_100025747	F065268	N/A	MIKSSESVSIAYYELQNARRESLLSQNXTASEEEDINVSLNTEEKNMNALFFNHEMIKISISTELNAXINIHEANDIIVCIKYIY
Ga0272438_100025752	F021216	N/A	MKSRMKSNAMRREHHELEKALRNHERSNEDHLNDTLNEHTESISSCDVIEESNERERK
Ga0272438_100025753	F100079	N/A	MFRHRYFICKXYADKKTSLKEEKHKXVNKEXLKYIVXLKV
Ga0272438_100025773	F021216	N/A	MKSRMKSNAMRKEHHELEKALRNYERSDDDHLNNILNEHIESISSCDVIKESDERKRE
Ga0272438_100025783	F094624	N/A	LINLNQNSCLNFKFSESLLKNLMFQAXDKLINVKKFIKKMKKLTEHLYDEMLITQIIYEFNVNLFCCSCFKYFVEDEIXLNACNLSITHLAVKLNDHNIDFFKIKRVFKNNSLIIKLIFLTFMKIHSIFHVIFLNHIASDLLLSQHQKS
Ga0272438_100025785	F071806	N/A	MKLQLQIITLNSVQLHLFSIISTFLQILIFMNLEIEEFNVENVKFQLNQDILNLDEYSADTLTQTLXK