Scaffold Ga0272435_1015836

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1015836
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4072
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029296	Metagenome	188	Y
F033266	Metagenome	177	Y
F049323	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_10158362	F033266	N/A	MFNYSFIEECSERFXNHFSQTSDVDSSKSSSAALFIHEDDESFIEMIISFMFYEIXKTCNLALNKETDQLYELSK
Ga0272435_10158364	F049323	N/A	MMKEMNEESAEQMRRSAEDDSKRCARFKLNIASXLALIKLIRIRSELXLIQTCL
Ga0272435_10158365	F029296	N/A	EAQMNKHRRDVIYEVDDQVXLVFENIKITRSCKDLKDKQLNLYSITVKVEIFYCLQLSRSMKHIHSVFSLKYLXSSSSNSLLKQHSELFRLMIIEENEKHXKVDDILNFRQYRERLQYKIKXIEIDYDDKXYYVDKEKFDDSKKVLNEFHKLYLNKSH