NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1010140

Scaffold Ga0272435_1010140


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1010140 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5745
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039410Metagenome163Y
F052973Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10101405F052973GAGMFRGCARLERDVFVTRKEGDVDEQDVGERKECWGRKRVLSHI
Ga0272435_10101407F039410N/AAFKSHXVLYAISLLMFVMNRAKTSILFFFERFNSVLNEATSMLXIENDSSXAVVETSRLSIVEALVXVIEESEVDRDQLECFELSETEKTEIGVFNXFEKTMTSFRIFSNISFLFIQSLLNMTSXXSISAINIGTVNSLXLSMMRLSRILXVMIFLDIFSS

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