Scaffold Ga0272435_1010134

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1010134
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5747
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011463	Metagenome	290	Y
F055317	Metagenome	138	Y
F059496	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_10101341	F059496	N/A	IFKDSYNXILRIQKKIDTKASIYVMFRDCARLERNVFVTXKEDDVNE
Ga0272435_10101342	F011463	N/A	MKELLSFDHQQLKKTKLIIEVQINKHKXNVTYEVNDXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKVSTFYHLCLSISMKHLHSMFSSKLLQLYSKDSLSEQHSESFRSITIKDDEHXEINDILNFRRY
Ga0272435_10101345	F055317	N/A	MKQRDKSEIQQLKAKLQAFTAITVNVIITAFSIVIYFEXSRYHKILDSSMFIDEKNSTXKNXSLDIREKLAMNIDIFSNELYKLSYIYFQLADDIVEVTQVRRDLNCDNFYLTVNELLKKLAQSFHDSDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVIDLKNKINSRLXIFXTTQMKSLIKLSDIQNYLIRLNNEHKAVQEIKNKLLKHNDSKIIISKAIIAVQSSTLKSDXSKLRSAVLTSVKNADVLVETCFVYHKLDHSFRECLNQSIKVNAVDENYDRFELNIESEFKSKN