Basic Information | |
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Taxon OID | 3300031447 Open in IMG/M |
Scaffold ID | Ga0272435_1010066 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5775 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F021452 | Metagenome | 218 | Y |
F057011 | Metagenome | 136 | Y |
F070712 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272435_10100661 | F021452 | AGAAG | MQLSXISLNAXNCSKFKKRSAFIKVMIESNILIFCFISIFDDSFNFKSFIVDVILNSLKKIFEFLALINTEVINMTFIDKSLISKLCEHFDIQSISLSKSKSIQSYDEISDXKSITYTLYTSIMIQEYKNEMMFLLITHLN |
Ga0272435_10100665 | F057011 | N/A | LKENYFEKSFLINAFFISQSNSFSLCSLIDSDFVVYTLIHDKLVNKVCQKLEIQFILLAKEKLIQNYDEKLVRKTITHKILLNLTIESHKKLTMSMLIADIEHHEAILSKLXMNKNEILLNMRYDTIVFSDQLNTSISIFSISSNIKHSSXLXSTLISSAAHSKISKMLKCSVSFFQKKLFSIQNINVISF |
Ga0272435_10100666 | F070712 | N/A | MNNIKEKKFLIKVRKQVIFAEKQDSLNLYKKIEVTTLINHSKLRDVILTSIKDIDLQAEIYFIYHKSDHTFRKCFD |
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