Scaffold Ga0272435_1007954

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1007954
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6922
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058565	Metagenome	134	Y
F070710	Metagenome	122	Y
F075493	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_10079541	F058565	AGAAG	MNHMNCSSADSKMIVSDVNSLQENRDARLKHLRNDEENVANIIDLLIKISTLEKEKSKDYSXKKIALKLIQCL
Ga0272435_10079543	F070710	AGCAG	MFNQKVRKIIDDQKHTKSLLIAESTTVMNNFMTEQSFLQILQYNIRKSLKIQESFLINKEVREFDIVAIQKQDHNNNDLQSFSSAHNFFYLVKNSSTQSRTCIYINKHLRLNQXIVETVESDICLIRILTCNTDDETQILRILNVYNSCSLFTKFTEKSLIISCLNKLLKNDCKQLIIKDFNLHHSHXEKQRCFTHHMMTNTLLNIITNAKLELLLKSDTITHEVHN
Ga0272435_10079546	F075493	N/A	MQSVQAMHEYMLRYLMTSFTVASQAIHVXNISKVQISIQIYAFSFDVHCKSAFCFLKIITHLYHLIAQMXSLCXDYIDVCNAFSVLFSSLISLILVILLYCNAIVCXSYYEEEKSASSASXLYLRIFLNEDIQKYYFLDDK