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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1005728 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8984 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (23.08%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F007840 | Metagenome | 343 | Y |
| F057010 | Metagenome | 136 | N |
| F078020 | Metagenome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_10057281 | F078020 | N/A | MTKILMQFFFDRLINAXKDAAFTLNIKKFFFKAVEVNRXSTLKAERIEEFDDRDHFECEALTDIEKTEMKAFNXFEKTMTSFHISSSISFLFIQNFSNMTSXXSISAINIETVNFLXLSTVRLSRILXVMIFFVSFSSYSLINFSLASRMSXISSFXHIXLTSFVXIKM |
| Ga0272435_100572812 | F001253 | GAGG | VTFIKDVMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKFKSIREFDDHYAKKLITHAIYLNLTVQDYMKRFVSMLITRLSQHQMILEKTXMNKIEIMIDMRNNRL |
| Ga0272435_10057282 | F057010 | N/A | MSHFFKERFEASFFIVEDNDSFAEIITSSMIMKALKKRCEELKARLQAREIISSSSIYSERSRFQKILDSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVNELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNKINSRLXFAXITQLIQLSTLKEIRFYLIRLNNDQRAIREIKNREAMIKAXTTKQIIFVEESVKATRRIIEMKMTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECSNRSFRINALDDKFDHSSNFNSESDSKN |
| Ga0272435_10057283 | F007840 | N/A | MINAIERQNNTRKSIESTARLIELLNDLQLIKYTSFISINRISDKESSLIARESNRSRESINSQIKQQKRLHLLLSSIALRSISFF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |