Scaffold Ga0272435_1005121

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1005121
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9837
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025887	Metagenome	199	Y
F086376	Metagenome	110	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100512111	F086376	N/A	MTRSSESASIAHYELQNARRESLLSQNQTASEEEDMNASSDTEEKNMNALLFDHEMIKISISTELNAXINIHKADDIIIFIKYICQQHDIEIKIYNDMIQMLKDINEINIMLKIIQTHLQKENRNKNMIIHHLKAASSXQSTSISEDKFLKLIKLLNSFLFKDSTQNVNN
Ga0272435_10051215	F098340	N/A	MIKVAVYXTLVKNKKIKIFFLIISEINKVFSSVEDFAKLNEMISVMSLNELKKRLLIVYQNLLNVFDRKKTTQLSLHQSYDHKIELEDES
Ga0272435_10051219	F025887	N/A	MFDDSFDFKSFIVDVILSSLKKIFRSFTLINTKVINITFIDESLMLKLCEHFDIQSILLSKSKLIQLYDKISDQKSITYALYTLIMI