NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1005113

Scaffold Ga0272435_1005113


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1005113 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9854
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F008115Metagenome338Y
F057011Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10051131F000597N/AMKDVLISSMTSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVITQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTI
Ga0272435_10051134F057011N/AVLXSIESQCIKKXRVXLIYIELXVQFKKLTISFRIIEKIEIIFLCSQIEVLLKENYFEKSFLINAFLISQSNSFSLRSLIDSDFVVYTLIHDKLVNKVCQKLEIQSILLAKEKLIRDYDEKLARKTIIHKILLNLTIESHKKLTMSMLIADIEHHEAILSKLXMNKNEILLNMRHDTIIFSDQLNTSISIFSISSNTKHSS
Ga0272435_10051136F008115N/AMLXNVYQLHDLSSSIVLNRDSQFILIIXQSLCKXLRIMTSLSIVYHFEINDQLKQANQDVECKLRIYCNYMQNNXAKXLSMMKFSENFNIFLIISMISFYFNKEFHSXMSFNSNTTDYKIIHERLEVKKVNDIIIQMKELLIFNRQQLKKTKQIIEAQINKHKXDIIYEVNDXVXLFFRNIKTTRSCKNLKDKQLESYQITVKVEIFYHLHLLISMKQLHSMFSSKLLRSCLDDFLSKQHSESFRFLTIKDDEHXKINDILNSRCYQDQIQYKVK
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