Scaffold Ga0272435_1003601

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1003601
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12990
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F008115	Metagenome	338	Y
F028667	Metagenome	190	Y
F052973	Metagenome	141	Y
F104136	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_10036011	F000597	N/A	MSMSDNSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIEFLTLIKAKSIQEFDDHYAKKLITHVIYLNLTVQDHTIDTAFILITXLNQHQMIFEKIXMNKIDLVINM
Ga0272435_100360112	F052973	GAG	MFRDCARFERNVFVTXKEDDVDEQDVDERKEYXERKRMLNHIXVKSRSDLD
Ga0272435_10036012	F028667	N/A	MIXNNLLHLFRKFARNSLNYFHQKIHRQIYSNLSNQSLNQIYLIFLTMTCNFKSVESXTAHLLKSIVNKXVFLISFNVSVDIKNIDISXNIKTEEQLRQXVHNQSNEIIKMLNEFKSQRDTTLKLNEQXIVVQVKHDKRLNQLKIKQMIIDTLKEINKCYQEKMLNLKNKLKEVSYSANQSXSHQFTESXVSMKSLSRQSIKNRTXRESFTLFNNDHHKSFKFSNSSVFINEDKSTXNSXRIKINDKLQTNVNHFIDEIICIVYVISRLEDDTVEHIFAXHHHDAFHSYISIYKLLKHLEEIYEDQNKNQKCHHEYNALRQADKLFNIFYFNFMKLFSSLDYDDCTLMNDLQNKINNHLQNALSVCLENFTSLHCLKIFLQDVNNKQXVNYQLCSQLCTVIVKVMIIFDKHAATSLSVTTLIINYIKFILSFISESARSFIICYTCKILSHLFKNYS
Ga0272435_10036015	F104136	N/A	MIFSIRLAQIFSELQLMNELXIXMNLLTFACKSMFDXQNXMLNQFSRHQXFKSLTLLLASXQQSLLQSQLQSLHKRNSEYXTLILLKRSCLKKNSASNARSQNIEHMTVLNQLKCMKLQRIXKTTYSHRSSDXKQYTHILLHQHVX
Ga0272435_10036018	F008115	N/A	MNFITELFLSEDYNIICTIICHLIKERHYVFCHXKDDDISVEKMIXIMLXNVYRLHDLLSSIVSNRDFQFISTMXKSLCKRLRITASLFTIYHSEIDDQLKXVNQNVERELRIYCNYMQNDXVKXISMMKFSNNFNIFLITSMIFFYFNKEFHFRMSFNSDTTDYETTHERLEARKADDIVIQMKELLSFDHQQLKKMKLIIEVQINKHRXNVTYEVDNXVXLSFRNVKTTRLCKDLKDKQLDLYQITAKIDIFYHLHLSVSMKHLHSIFSSKLLXSYSEDSLSEQHLESLKSITIKDDEHXKIDNILNFRRYRDRIQYKVKXKDLDRNDEXYYVNKEKFDDSEKVLNEFHKLYSSKSR