Scaffold Ga0272435_1002707

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1002707
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16277
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F011463	Metagenome	290	Y
F026450	Metagenome	197	Y
F049323	Metagenome	146	Y
F084912	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100270711	F011463	N/A	LKKTKLIIEAQINKHRRDVIYEIDDQIXLSFRNVKIMRSCKNLKDKQLDFYSIIVKVKTFYHFRLSTSMKHIHLMFSSKLLQSYSKDFLSEQHXKSLRLITIEDNKHXEIDDISNFRCYQDXIQYKVKXKDLNRNNK
Ga0272435_100270713	F049323	N/A	MKEMNEESAEQRKEVLKMTXRIQQRCARFKLDIASXLTLIKLIRIRSELXLIQTCL
Ga0272435_10027072	F084912	N/A	LIEESVKATRRIIEMKMTDQSKSRDAVLINVKENDLLIENCFLCHKSDHTSKECLNRSFKINALNDEFDHSLNFDSESDSKN
Ga0272435_10027073	F026450	N/A	MTLSFIVKHHFSLDLFLLKHSFNSISSFFLIMFRFFKDCFEASFFIVEDNDSFAEIITSSITMKALKKRCEELKARLQARKIISLSSIYFERSRFQKILNSSLFTDEKNSIXKNXYEKVQNKLKINVNLFSSERVKLSYIHFRLFNDAAEITQSRCECDCFNSYKIINELLKELSQLFDDSDKKVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKINFQLXFA
Ga0272435_10027074	F007840	N/A	MINAIKRQNNTRRSIESTAKLIELLDDLQLIKYASFTSINRISDKESSLIARESNQSRESINFQIKQQK
Ga0272435_10027075	F049323	N/A	MMKEMNEESAEQREEVLRMTXRVQQKCARFKLDIASXLALIKLIKVRSELXLIQTCL