Scaffold Ga0272435_1002604

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1002604
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16795
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019584	Metagenome	228	Y
F029296	Metagenome	188	Y
F049323	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_10026041	F019584	N/A	EKQLIVDLKNKIKFRLXFAXVTQLIQLSTLKEIRFYLIQLNNDQRAIQEIKNREAMIKAKTTKQIIFVEESVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNKSFEINALNNEFDCSSNFNSESDSKN
Ga0272435_10026046	F029296	AGCAG	MNKHKRDVIYEVNDQVXLVFKNIKITKSCKDLKDKQLNLYSITVKVKIFYRLQLSRSMKHIHSMFSLKCLXSSSNDFLSRQYSEFSRSMIIEENEKHXKVDNILNFRRYKERLQYKVKXIEINHDDEXYYVDKEKFNDLKKVLNKFHKLYLNKSH
Ga0272435_10026047	F049323	N/A	MMKEMNEESAEQXEEVLRMTXRIQQRCARFKLDIASXLALIKLIKVRSEFXSIQTCS