 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1002518 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17226 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (10.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F019584 | Metagenome | 228 | Y |
| F026450 | Metagenome | 197 | Y |
| F036504 | Metagenome | 169 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100251815 | F019584 | GAG | MIKAXTTKQIIFAEESVKATRRIIEMKMIDQSKSRDTVLTNVKENDLLIENCFLCHKSDHTFKECLNKSFRINALNDEFDHSLNFDSEFDSKN |
| Ga0272435_100251816 | F026450 | N/A | MSRLFKEYFKASFFIVEDNDSFAEIITSSMTMKALKKRCEELKAMLQAREIISSSSIYSERSRFQKILDSLLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRCERDCINSYKIVNELLKKLAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQXLFFYLDY |
| Ga0272435_10025183 | F036504 | N/A | MPRQDTQSVEHXVNQKEISLISEVDQRFRSSRESFTLFENENNHHKFIKLLNSLIFIKTDDSTXKTXNIKIADKLDVNANHYSTEKIRIVYVIFRLEDDADQQIYAKHHVNAFSLYQSLSELLKHLKEIYEDQNLIQKCRCKYVVLKQLNKPFSSFYSKFTKIFSFLNYDDITLMNNIQNKINNHLQNALSVCLIEFSSLDKLKTLLQDVNNKQQVNYQLRDEQXTVKSIAASKKRFVSSLTSASTTSYVQLATFFTFEPEQSRMSIICFNCKVSSHLSKNCS |
| Ga0272435_10025184 | F001253 | GAGG | VTFIKDVMKDVLISSTMSSSDDLFALKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIRKFNDHYAKKLITHAIYSNLTV |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |