Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1002454 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031447 Open in IMG/M

Scaffold ID

Ga0272435_1002454 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17634
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

17634

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.7

Long. (^o)

159.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F028367	Metagenome	191	Y
F044226	Metagenome	154	Y
F094620	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100245413	F044226	N/A	MKFSDNFNIFSITLMIFFYFNKEFHSXMSFNSDTTDYETIHERLEARKADDIVIXMKELLSFDHQ
Ga0272435_100245416	F028367	N/A	MSLCKLDKILLKENYFEKSFLIDAHLISQNQSFSLRSLINSDSVIYMIIHFNLVDKVCKKLKIQFISLTKEKLIRDYNEKIFKKTITHKILFNLIIESYKKLTVSMLIADINHHEVILSKFXMNKNEILLNMQNNVIVFLNQLNTSISIFSILLNSKHSSXSRSSLFFFITQTKISMMLK
Ga0272435_10024542	F094620	N/A	MXQSLCKRLKIKVNLSTVYHSEIDNQSKRANQDVERELRIYCNYMQNDXAKXLSMMKFSDNFNTFSTILMISFYFNKDFHSRMSFNSDTTDYEMTHQRIETRKIDDIVIXMSELLIFNHQQLKKIKQITEAQMNKHRRDVIYEVDDQVXLVFENIKITRSCKDLKDKQLDFYSITVKVEIFYRLQLSRSMKHIHSVFSSKYLXTSSNDSLSEQHSESSRSMIIEENEEHXEVNDILNFRRYRERLQYKVKXIEIDRDNEXYYVDKEKFDDSKKVLNEFHKLYSNKSH
Ga0272435_10024545	F002432	N/A	MQNDXAKXLSMIEFSKNFNIFSIISMTLFYFNKNFHSRMSFNSDTTNYKTTCECLEAKKANNIIIXMKELLIFDHQQLKKTKQIIEAQINKHRXDVIYEVNDXVXLFFRNIKTTRSCKNLKDKQLEFYQITVKVEIFYHLHLLISMKQLHLRFSLKLLCSCLDDLLSEQHSESSRFLTIEDDKHXKIDDILNFRRYQDXIQYKVKXMRLDXDDEXYYVNKEEFKSLKEVLVEFHKLYSDKSH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1002454

Overview

Ecosystem & Geography

Associated Families

Sequences