Scaffold Ga0272435_1002336

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1002336
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18408
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024448	Metagenome	205	Y
F033266	Metagenome	177	Y
F087978	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100233612	F024448	N/A	MKDVLISSTMSSSNNFFASKSLTIEYVLSSNEISYSLKSLIDIEAADYLFIDEVIMQIICNQLQIESLTLIKAKSIREFNDHYAKKLITRVIYLNLTVQDHMIDTAFMLITXLNQHQMIFKKIXMNKINLVIDMQINFLQFSNFTSSQKSIVLLSSNKTIMKQKSLTST
Ga0272435_10023367	F033266	N/A	MFSHLSTKEHSEEFQNHFFKIFDADSSKLSSAASFIHEDDKSFIEIIIFFMFYEIXKTXSLAFNEETDXLYKLNKQQEDEIKELKTRLQAKENTSSDFIYFKRFRSQKISDSLLFTDEKNST
Ga0272435_10023369	F087978	N/A	MFSSKLLQLYSENSLSEQHSKSLRSITIENDEHXKIDDILNFRRYQGXIQYKVKXKDLNKDNEXYYVDKEKFNDSKKVLNEFHKLYSSKSR