Scaffold Ga0272435_1002217

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1002217
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19107
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F008115	Metagenome	338	Y
F028368	Metagenome	191	Y
F044227	Metagenome	154	Y
F048017	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_10022171	F044227	N/A	MQLXLKSSNNETCTHALLELIAFAIKNTMKCXLLKLLNNHYYHEEFQSSCKNDDENETFEAI
Ga0272435_100221715	F008115	N/A	MLXNVYXLHDLFSSIVSNRDSQFISTMXKSLCKXLRITASLFIVYHFEINDQLKRVNQDVERKLRIYCNNMQNDXIKXISMMKFNDNFNIFLITSIIFFYFNKEFHSXMSFDSNTTDYKTTHERLKARKADDIIIXMKELLSFDHQQLKKTKLIIEVQINKHRXNVTYEVDDXVXLSFRNVKTMRLCKDLKDKQLDLYQITAKVSIFYQLCLSVSMKHLHSMFSSKLLXLYSEDSLSEQHSESLRLITIKDDEHXKIDNILNFRRYXDQIQYKVKXKDLDRNNEXYYVDKEKFNNSEKVLNEFHKLYSSKSR
Ga0272435_100221716	F048017	N/A	MFIDHQTLKIFMKNKQLSQQQVNYLNILLKFNFQIIFRSDKINTKVDALIRMSLTNVSESAQRFKDHFQTILTLNKVNVLSIKLKANLYQQVCIINQINEFCSKYKQAMNDNKLKFHITKLKNCKIIDNVLFRKDLL
Ga0272435_100221718	F028368	AGAAG	LCKLDEILSKENYFEKLFLIDAHFISQNXSFNLRSLIDSDLVIYIIIHFNLVNKVCKKLKIQSISLTKKKLIRDYDEKIFKKTITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMXNNVIVFSNQLNTFISIFSILLNSKHSSXSXSTSFSSIIQTKISTMLKRLISIIARKESFSIQSINIASFKRRLNCSKKNKIKVFALFMININRKIAYNTQCDLNALNISLINKTTQNLKDIKAKLFLKYHKFLNVFDXVLRAYQDXTRLKL
Ga0272435_100221719	F004755	N/A	LKELAQLFNDLNKKVNFRKEYYNLIQESKKFSEFYTQFQRLSFYLDYHEKQLIIDLKDKIHSCLXFIXVDQLVQSDSLKEIRFYLIHLNNNQXVIQEIKNKIKRVNDISKTIFHRTTIITQQSFNHSKSDYLKSCDAILTNVKEVDILVESCFICHKSDHSFKECFNXPTRTNAVNKKYDRFDFNSNFDSKN