Scaffold Ga0272435_1002007

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1002007
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20713
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019584	Metagenome	228	Y
F026450	Metagenome	197	Y
F046102	Metagenome	151	Y
F049323	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100200715	F046102	N/A	MKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMKHFIFMLITXLSQHQMILEKTXMNKIEMTIDMKDDHLQFSSFETHIKAFIKAHSTVLSSKKIAIEQKSLISI
Ga0272435_100200718	F049323	N/A	MMKEVNEESAEQTKRSAENDLKKCARFKLDIASXLALIKLIRVRSELXSI
Ga0272435_10020074	F019584	N/A	LNNDQRAIQEIKNREAMIKAQTTKQIIFVEESVKATCRIIETKMIVQSKSRDAVLINVKENDLLIENCFLCHKSDHTSKKCLNRSFRINALNDEFDHSLNFNSESDSKN
Ga0272435_10020075	F026450	N/A	MTSFSIAEHYSSLDLFLLKHSFNSISSFFFIMFRFFKERFEASFFIVKDNDSFAEIITSSMTMKALKKXCEKLKARLQARKIISSSLIYSERFRFQKIFDFSLFTDEKNSIXKNXYEKVQNKLEINVDLFSSERVKLSYVHFRLFNDAAKITQLRREHDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYT