Scaffold Ga0272435_1001989

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1001989
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20880
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011463	Metagenome	290	Y
F048017	Metagenome	148	Y
F052973	Metagenome	141	Y
F055317	Metagenome	138	Y
F059496	Metagenome	133	Y
F076668	Metagenome	117	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100198912	F059496	N/A	LIFKDNYNXILRIQKKIDIKASIYVMFRDCARLERNVFVTXKEDDVNEQDVDERKEC
Ga0272435_100198913	F011463	N/A	MRLCKDLKDKQLDLYQITAKIETFYHLHLFTNMKHIHLMFSLKLLQSYSEDSLSEQHSESFKSIIIENDEHXKIDNILNFRCYQDXIQYKVKXKDLDRNNEXYYVNKEKFNDSEKVLNEFHKLYSSKSR
Ga0272435_100198915	F048017	N/A	MKNKQLSQHQVNYLNILSKFNFQIIFKSGKMNIKVDVLIQMFLTNVSESAKRFEDCFQTILIFDKVDILFIDLKLSANSKSEVNLYQRVQLVNQTDEFCSKYKQAMNDNKLKFHITKLKNCKIIDDVLFRKNLLXVSENMHTKLLQEVHDQSLIFHLDNKXIIDLVQHFYYXSDD
Ga0272435_100198917	F055317	N/A	VNCFKINHSQKHLLCXTNIHLSFSIIEHRHSFNSLQTTFIFFTMTFKNTSDKDKAFVDFLQQTRSQAFSFIVNSQHTSSFIAFNESNAEIIIHNDMKVXKKRIYVLNKETDHLIKMKQRDKSEIQQLKAKLQAFTAITINVIITAFSIVIYFEXSKYHKILNSSMFTDEKNSTXENXSLDIQEKLAMNVNIFSNKLYKLSYIHSRLADDIIEITQVRRDFNCDNLYLTVNELLKKLTQSFHDSDKKDNYRRKYINLIQESKKFSNFFNQFQRLYIYLKYQKNVLVINLKNKINSHLXIFXTAQMKSLIKLSDIQNYLIHLNNEHRAVQEIKNKLLKHDDSKIIISKATIAVQSLTSKFDXSKSRSAVLINVKNANVLVETCFVCHKSDHSFRECLNQSIKVNAVDENYNHFKLNIKSEFKSKN
Ga0272435_100198918	F052973	N/A	MFKDCVRLERNVFVTXKENDVDEQDVDERKECXERKKMLSHI
Ga0272435_10019892	F104131	N/A	MSRLFKEHFEASFFIVEDNNSFAEIITSSMIIKALKKRCKELKARLQAREIISSSSIYSERSRSQKILDSLLFTDEKNSI
Ga0272435_10019898	F076668	N/A	MHSTDYYAIKETSVFKSTTTTKKIMHMNNALSTDILMLCNRKDATNQTLLRCVKFENIRRLQKISFSKXSSKDXLKRLCIIMLEQTCYNMIFAFSVLSXMLFKKSLKTLXFSLXKVSALLFCIITFVVEFSLTFCSMQTSTX