Scaffold Ga0272435_1001688

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1001688
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23782
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F028978	Metagenome	189	Y
F048017	Metagenome	148	Y
F055317	Metagenome	138	Y
F057012	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100168820	F055317	GAG	LKAQLQAFTAITVNVIISAFLIVIYFKQFRYHKILDSSMFTDEKNSTXENRFLDIQEKLAMNIDIFSNEFYKLSYINSQLADDIIKVTQVKRNLNCDNLYLTVNELLKKLAQLFHDSDKKDNYRREYINLIQESKKFSDFFNQFQQLYIYLKYQKNVLVINLKNKINFHLQIFXTTQMKLLIKLSDIXNYLIHLNNEHKAVXKIKNKLLKHDDSKIIISKVTIAVQSSTLKSDXLKSRSAVLTNVKNANVLVEICFICHKSDHSFKECLNQSIKVNAVDENYNHFELNTESEFKSKN
Ga0272435_100168822	F048017	N/A	MKNKQLSQHQVNYLNILSKFNFQIIFKSDKMNTKVNALTXMFLANVSESVKXFKDCFQTILIFDRVNILSIDLKLSANSKSEVNLYQRVXLVNQMNEFCSKYKQAENDNKLKLHSIKMKNYKIVDNILFRKDEIIVGERLKKLSQSQNFFFDFNSNSTFCIC
Ga0272435_100168826	F057012	AGAAG	MQLSXISSDAXNCSKFKKRLAFIKVVTENDILIFCFISMFDDSFDFKSFTVDVILSNLEKIFRFFTLIDTEVTDMTFINESLMSELCECFNIQSILLSKSKLIXLYNEIFDXKLITYTLYTLIMIQEHKNEMMSLLITHLNQHKIIFENLXLKRNQMLINSANDXLISSLKIQTSKSVILKVSSQSAFYKSESNEICKMKXKNLNSIVTLMIILKRLMNQKSVNRFIESALIAKQST
Ga0272435_10016884	F028978	N/A	MKIADLKEKENDESIYQLILKANRINENCILLREVVLKDKTQYEDIKLKDCXVQNEILYXDDLL
Ga0272435_10016888	F001253	N/A	MKDVLISSTMSSSNNLFASKSLTTECVLFSNEISYSLKSLINIEAADYSFIDKLIAQNVCDHLQIESLSLIKLKSIREFNDYYAKKLITHAIYLNLTVQDHMKRFVFMLIT