Scaffold Ga0272435_1001638

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1001638
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24380
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F007840	Metagenome	343	Y
F036504	Metagenome	169	Y
F057010	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_10016381	F001253	GAG	VTFIKDAMKDVLISSTTSSLNDLFALKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLITHAIYSNLT
Ga0272435_10016382	F036504	N/A	VIFRLEDDADQQIYAKHRVDAFSFYQSLSELLKHLKEIYEDQNLIRKCHHEYVALKQLNKFFSFFYSEFTRIFSFLNYDDITLMNDIQNKINNHLQNALSVCLIKFSSLNKLKIFLQDVNNKQRVNYQLRDEQXTVKSIAASKKRFVSLSTSASVSTTSYVQLATFFILESEQSRMSIICFNCKVLNHLSKNCSQLKTSTSTSHAFISCLNEIVMSKEEKKLFTEKSKNETKN
Ga0272435_100163827	F007840	N/A	MIDAIERQNNTKESIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNRSRESNNLQIKQQKQLYLLLLSIILRSISFF
Ga0272435_100163828	F057010	N/A	MSHFFKERFEASFFIVKDNDSFAEIITSSMIMKALKKRCEELKVRLQAREITSSSSIYSERSRFQKILDSSLFTDEKNSIXENXYKKVQNKLKINVNLFSSKRVKLSYVHFRLFDDAAEIIQSRREHDCFNSYKIVNELLKKLAQLFNDSDKEVNFCRNYYDLIQEQKKFSKFYTQFQRLFFYLDYQEKQSIIDLKNKINFRLQFAXITQLIQLSTLKEIRFYLIRLNNDQRAIQEIKNREAMIKAQTTKQIIFAEKSIKAIRRIIEMKMTDQFKSRDAVLTSVKENDLLNENCFLCHKSDHTSKECLNRSFRINALNDEFDHSLNFNSESDSKN
Ga0272435_10016386	F001253	GAGG	VTFIKDVMKNVLISSIISSLNDFFVLKSLTTECVLFSNEISYSLKSLIDTEAADYSFINELTAQNVCDHLQIKSLSLIKLKSIRRFNDHYAKKLITHAINLNLTVQDHMKRFIFMLITQLNQHQMILEKT