Scaffold Ga0272435_1001475

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1001475
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26219
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (10.34%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024448	Metagenome	205	Y
F028978	Metagenome	189	Y
F044227	Metagenome	154	Y
F046102	Metagenome	151	Y
F055318	Metagenome	138	Y
F064252	Metagenome	128	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100147511	F046102	N/A	MSSLNDLFASKSLTIECVLFSNEINYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLITHTIYSNLTVQDHMKRFTFMLITXLNQYQMILEKTXMNKIKMTIDMKNDRLQFSSFEAHIKAFIKAHSTVLSSKKIAIEQKSSTSI
Ga0272435_100147514	F028978	N/A	MKITDLEKKKNNESIYXLILEANRINENYILLREVVLKDEAQYKDTKLRNCXVQNEILYQSDLLXVFFDEHLQMKLI
Ga0272435_100147518	F064252	N/A	MKSQASIKNYTXRESSTLFNNNHHKFFKFLNLFIFIDEDELTXNSXRIKINDKLQTNVNHFNNENICIVYVISRLEDDSAEQIFAXHQHNALHSYISINELFEHLKEIYNELNRNQKCCHEYNALRQAEKSFNVFYFNFIKLFSYLKYNDCTLMNDLQNKINNHLQNALSICSENFTLLTHLRIFLQDVNNKQRVNYQLRSQLCTVIIKVTVILDKCIATSSSMITLIINYVKFILSSISELARLFIICYTCKILSYLFKNCSQNKINTSASYAFIFYLHEIIISKNKKNEKMSSFKDDKTKN
Ga0272435_100147519	F024448	N/A	MSMSDDSFASESLTTECVLSSNKISYSLKSLIDIKAADYLFIDEVIVQIVCDQLQIKSLTLIKAKSIQEFDDYYVKKLITHVIYLNLTVQDHTINTVFMLITXLNQHQMILEKTXMNKINLVIDMQINFLQFSNFTLNLKSIVLLTSNKTIMKQKSLTFTHILKRSFTIFQLSLKSLSFSQLN
Ga0272435_10014754	F044227	N/A	MQLQIKSSDNKACIHAFLKLIAFAIKNVTKCXLLELLNNHHYYEKSQSSSKDDDENEALEAI
Ga0272435_10014755	F100079	N/A	MFKHRHFIHEXYADEKTSLRKEKHKRINKEXLNYAVXLKV
Ga0272435_10014756	F055318	N/A	MLRDDEALCIDCMQSFRDHADFDNLNAHATSNLHADEKVK