Scaffold Ga0272435_1001122

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1001122
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32225
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (30.77%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F024448	Metagenome	205	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F036504	Metagenome	169	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100112212	F036504	N/A	MISTLICHSEVEXSLTFEAHFQXESSTLSNNKNKNDYHKFIKLLNSLIFIETDDFIXETXNIKIADKLDINVNHYFTEKIHIVYVIFRLENDADQQIYAKHCVNTFSFYQSLSKLLKHLKEIYEDQNLIXKYHCKYITLKQLNKLFNSFYSEFTRIFSFLNYDDIILMNDIQNKINNHLQNMLSVCFIKFSSLDKLKIFLQNVNNKQQVNYQLHDEQXTVKLITALKKCFISSFTSTSVSTINYIQFATFFTFKFEXFKMLIICFNCKVSSHFSKNYFQLKIITLTFYTFIFHLNEIIMLKEKKKLLTEKLKNKTKN
Ga0272435_100112217	F032102	N/A	MKIIDLKKNINESIYKQILEINEINENCTLLHKVIARDKTQYEDIKLKNCXTQNEILYHDSQL
Ga0272435_100112221	F094626	N/A	MFLNERNIITVRFFKKLNDKMLDSFINLNLVDSSYKLKLSKSMHVHDVFHSDLLCSIVDDFLSDQKNEFSNSIVINDEDK
Ga0272435_100112222	F036036	N/A	MLISLIHHLFSCFDQSFTSENQYFVHLLRYILNSIDLQAFASAFILNDVRIEAYMRMKVLIHEQESQENDXEQNVIINKLDHE
Ga0272435_100112225	F000597	GAG	VTFIKDAMKDVLISSTMSSSDDFFASKSLTIECVLFSNEISYLLKSLIDIKVADYSFINKVIVQIVCDQLQIESLTLIKVKSIXEFNDHYTKKLITHVIYSNLTVQDHEIDTAFMLIT
Ga0272435_10011227	F024448	N/A	VTFIKDVMKDVLISLTMSSSDDFFASKSLTTKCVLSSNEINYSLKSLIDIEAADYLFIDEVIAQIVCDQLQIKFLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDTAFMLITRLNQHQMILEKIXMNKIDLVIDMQIDSLQFSNFTSSQKSIVLLSSNKTITKQKSLTFT