Scaffold Ga0272435_1001117

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1001117
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32363
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (19.35%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028368	Metagenome	191	Y
F042102	Metagenome	158	Y
F046102	Metagenome	151	Y
F049323	Metagenome	146	Y
F055317	Metagenome	138	Y
F064252	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100111716	F042102	N/A	MTRSSESASIARYELQNARRESLLSQNXTVSEEEGMNASLNTEEENTNALLFDHEMIKISINTELNAXISAHEADDIVAFIKYMCQQHDIEIETHNDMIQMLEDVNETNIMLEITQTRLQKENRNKNMIIHHLEAASSRQSTLISEDXFSKSIKLLNSSLFEDSTQNIDNXLSXMQNKLKANKNHFSIKELKIAYIKSRVSEAAIKHIASRMQDVFLNSFLEVEEVLSIINKMYDDLNHCHTTQREYLKLYQNKIFFHEFXMKFQRFSAELEYNNEILLDDLQHKISSDLQQATLNEQITNLNEFVNICMRVNVRLTELNARSVVKASATQAARSVSNTSTARLTSSVSSXKKLRRLNLDSIQKELFKKKLCFKCKKSEHRAYDCLKTTQVHEIAANSKNDLFSSK
Ga0272435_10011172	F049323	N/A	MMKEMNEESAEQMRRSAENDLKKCARFKLDIASXLALIKLIRIRSELXLIQTCS
Ga0272435_100111721	F046102	N/A	VLISSTMSSSNDFFALKSLTTECVLSSNEISYSLKSLIDTEAANYSFIDELIAQNTCDHLQIESLSLIKLKSIRKFNDHYAKKLITHAIYLNLTVQDHMKRFVFMLITRLSQHQMILEKTXMNKIKMTIDMKDDHLSFSSFEAHIKASIKTHSTLFSVIKKIMIEQKSLIFT
Ga0272435_100111724	F028368	N/A	VKIISLCNLDEILSKENYFDKLFLVNALLILQNKSFNLCSLINSDSVIYTIIHINLVNKVCKESRIQFISLTKEKLIKEYDEKIFKKIIIHKILLNLIIESHKKLTVSMLIADINHHEVILEKSXMNKNEILLNMQIDVIIFSNQLNTFISIFLISLNSKHSSXSRSTSFTFIFQSKISRMLKXSVSTTIQKESFSIQSINVTSFKTLLNHSKKNKIKVFALFMMNINKEIAYNTQCNFNALNVSFIEKTTQNLKAIKVKLSSEYHDFLNVFCHDSSLVRLSLLVLSDLFSLHHLD
Ga0272435_100111725	F055317	N/A	MFIDEKNSTXKNXYFDIQEKLAININIFSNELYKLSYINSQLANDVVKITQVRRDFNCDNFYLTVNELLEKLAQSFHDSDKKNNYRREYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVIDLKNKINSRLQIFXTAQMKSLIKLSDIQNYLIRLNNKHRAVQKIKNKLLKHDDSKIIISRATIAVQPSTLKFDXSKSRSAVLINIKNADVLVEICFICYKSDHSFRECLNQFIKVNAVDENYNYFKLDTESEFKSKN
Ga0272435_100111729	F064252	GAG	MTINIQEEIIIDLQEKVLSLKKRQRSVNQSRSRQSMKSLSRQSIENHTRRESFTLFDNDHHKFFKFLDLFIFIDEDESTXNSXKIKMNNKLQTNVNHFDNENICIIYMISRLEDDAAEHIFAXCQHDALHSYILIDELFKHLKEIYDELNRNXKCCREYNTLKQTDKSFNVFYFNFMKLFNYLNYNDCILMNDFQNKINNRLQNALSVCFKNFTSLTRLRIFLQDMNNKQXVNYQLRSQLCTVIIKVTVVSDKCTATSLSAMMTLIIKYVKSIIFFTFESERSSIICYTCKISNHLSKNCSQNKINTSASXAFTSRLHEIIIXKNKENEKMSSFEDSEAKN